Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0401
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           51   1e-08
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    32   0.55 
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)                30   2.2  
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)           29   3.9  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   6.8  
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)                 28   9.0  
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                28   9.0  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/61 (40%), Positives = 38/61 (62%)
 Frame = +2

Query: 353 KVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 532
           K  E   + +LDEA +RL +V +D   Y +++  LI Q L+QL+E  V IR R+ D +LV
Sbjct: 68  KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127

Query: 533 E 535
           +
Sbjct: 128 K 128



 Score = 41.1 bits (92), Expect(2) = 1e-08
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +2

Query: 635 GGIELVAARGRIKISNTLESRLELIAQQ 718
           GGIEL A +G+IK+ NTLESRLE++ +Q
Sbjct: 234 GGIELHAKQGKIKVVNTLESRLEMLGRQ 261



 Score = 35.9 bits (79), Expect(2) = 1e-08
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 536 SLLGKAQTDYKNKIKKDVVLKVDTENFLSPD 628
           ++ G A  +YK + KK++ L VD +NFL PD
Sbjct: 173 AVFGPATEEYKKQTKKEIELTVDEQNFLGPD 203


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 338 RLKVLKVREDHVRNVLDEARKRLAEV 415
           R+  LK +ED ++N+LDE R +  EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 560 DYKNKI-KKDVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLES 694
           DY N+I   D+V++ D  N L PD+ G IEL   R  +  SN ++S
Sbjct: 47  DYGNRIIGLDLVVRNDDGNILDPDSTGVIELY--RRHLSTSNKIQS 90


>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
          Length = 214

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -1

Query: 383 VHYVRDLHELSVP-----SDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGP 225
           ++Y++D H    P     + E G A + + S S    A P F SIP   D +  +DGP
Sbjct: 19  LYYLQDTHHNWYPVYCDFTSEAGKAWTLVLSFSYANHAKPEFFSIPFLDDGSLSEDGP 76


>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
          Length = 514

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 365 DHVRNVLDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESL 541
           D V   L+E   R  E+    T    +L   L+    FQL    + + +RQTD  L E L
Sbjct: 164 DLVHAQLEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQL 223

Query: 542 LGKAQTDYK 568
             K Q D K
Sbjct: 224 AKKVQGDVK 232


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 341  LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 451
            LK+LK R  H RN   EA+++  E  ++TK++ ++ +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +2

Query: 332  QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 442
            QA L+  +  +D+++   D  +KRLA++  + ++YS+
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYSK 2495


>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
          Length = 530

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 728 PAAAAGRSAPSETPECC 678
           PA  A   AP+ TPECC
Sbjct: 80  PAGCAPECAPTNTPECC 96


>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
 Frame = +2

Query: 308 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELL--VTLIVQALFQL 481
           IQ+   LNQ+R++ + ++ED V N      +   ++P D     E+L    ++  +L+Q 
Sbjct: 378 IQAQFTLNQSRIEEITMKEDLVVNHHLLGDEGFGDIPFDQDGEKEILREGEVMEDSLYQS 437

Query: 482 MEPTVTIRVRQTDKALVESLLGKAQTDYK-NKIKKDVVLKVDTENFLSP---DTCGGIEL 649
            + +        +K + +S   +++ D   ++  +D     D  +FL+    D  GG  L
Sbjct: 438 KDLSKITLDETENKGISDSTFERSKIDIALDEPIRDDGFGGDGVDFLADGFGDGFGGDAL 497

Query: 650 VAARGRIKISNTLESRLELIAQQLLPEI 733
           V     +  +   E  LE   Q+ +PEI
Sbjct: 498 VPGIDDLPTAAVDELGLEEALQEPVPEI 525


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 383  LDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQT 559
            L+E   R  E+    T    +L   L+    FQL    + + +RQTD  L E L  K Q 
Sbjct: 5016 LEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQLAKKVQG 5075

Query: 560  DYK 568
            D K
Sbjct: 5076 DVK 5078


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,070,338
Number of Sequences: 59808
Number of extensions: 423969
Number of successful extensions: 1237
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)