Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0400
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.22 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   3.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   4.7  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   6.2  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   8.2  
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    25   8.2  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 342 SNCFANESTTGSESRPAEKIRRETQRVDAWVRLHVDLF 229
           S+C  +ES    ES PA K   E   +D+W+    ++F
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWMIASCNIF 336


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 3   ASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDP 146
           AS+R+ + +M   NR+I +    +P  +   +    R  H+L D   P
Sbjct: 334 ASDRFKENSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVDELRP 381


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 58  PPLTTPRILIMQEPVTVDALDTSLRIHQIQ*PLH*MP 168
           PP+ +PR     +PV V+A+  S  +   Q PLH  P
Sbjct: 270 PPIPSPR---PPQPVAVEAIQQSRAVISQQLPLHVSP 303


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 160 NAKVIGSDGSVRTCLGRRR 104
           N++ +GS GS  T LGRRR
Sbjct: 3   NSRSVGSTGSNNTPLGRRR 21


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 166 PSALILGAGLGTPVTVLVE 222
           PS+ I+GAGLG  V +L +
Sbjct: 489 PSSAIMGAGLGKDVALLTD 507


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 81  PDHAGASHRRRPRHVLTDPSDPITFALDAFSS 176
           P HA +SH+     V +DP+ P     D   S
Sbjct: 430 PKHASSSHKSSIMSVNSDPTSPKVSKFDTSDS 461


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 154 LH*MPSALILGAGLGTPVTVLVELDKEVDVQPNPCINPLS 273
           LH + S    G  L   ++ L++ DKE+D+Q   C+  ++
Sbjct: 44  LHSLISNYTNGRELQNEISSLLKQDKELDLQIQDCMREMT 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,879
Number of Sequences: 5004
Number of extensions: 32380
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)