Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0400
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690...    31   0.50 
11_06_0596 + 25385744-25388890                                         28   4.7  
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118...    28   4.7  
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580     27   6.2  
03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937           27   8.2  
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607...    27   8.2  
01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     27   8.2  

>11_05_0050 +
           18665251-18665613,18667280-18667744,18668548-18669037,
           18669115-18669143
          Length = 448

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 63  ADYSPNPDHAGASHRRRPRHVLTDPSDPITF 155
           AD  PNP  A  SH +   HV + P  P+ F
Sbjct: 132 ADICPNPQPAYMSHPKPNPHVFSSPCSPVVF 162


>11_06_0596 + 25385744-25388890
          Length = 1048

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 122 VSRASTVTGSCMIRIRGVVSGGNDEAIIMTHSLIEVSFR 6
           +++  T   S  IR++ V S G+ EA++MT  L+  S R
Sbjct: 842 INKLHTTLRSLSIRMKPVSSWGSTEAVLMTPPLLLESLR 880


>01_06_0265 -
           28011181-28011240,28011298-28011375,28011493-28011802,
           28012913-28013533,28013733-28013818
          Length = 384

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 57  AAADYSPNPDHAGASHRRRPRHVLTDPSD 143
           +AA +SP  DHA A H     H  +D SD
Sbjct: 101 SAAAWSPARDHAHAHHNHHHHHHPSDSSD 129


>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
          Length = 726

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 311 PVVDSFAKQLLLSC*VSFGGARAVVSKSHPSWLSLCSPTCPGET 442
           P    F   +LL     F  A  VV ++H SW  L SP+  G +
Sbjct: 671 PFSSPFMTLVLLKRKAMFDHAPPVVKRAHSSWALLSSPSDDGHS 714


>03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937
          Length = 860

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 48  LIVAAADYSPNPDHAGASHRRRPRHVLT 131
           L   AAD +P P   GA  RR PR V T
Sbjct: 12  LATGAADQAPAPAALGALRRRLPRVVTT 39


>01_06_0551 +
           30159789-30159946,30160509-30160629,30160714-30160788,
           30160877-30161028,30161103-30161208,30161298-30161363,
           30161623-30161694,30161849-30161932,30162108-30162206,
           30162841-30162888,30162986-30163039,30163137-30163235,
           30163321-30163410,30163503-30163580,30163699-30163773,
           30163866-30163956,30164282-30164410,30164501-30164589
          Length = 561

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 218 SNSTKRSTCNLTHASTR*VSRRIFSAGRDSDPV 316
           SN T +S C    A T    R +F++G   DPV
Sbjct: 416 SNPTSQSECTAEQAYTWSKGRAVFASGSPFDPV 448


>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 348 VVRSPSEALGQLLANPTPLG*AFARPPVLVKLE 446
           + R+ S  LG+LLA+P+PL      P +L +++
Sbjct: 7   LARAGSSLLGRLLASPSPLRAGLPPPSLLSRIQ 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,205
Number of Sequences: 37544
Number of extensions: 257132
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)