Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0400
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)                   28   3.6  
SB_253| Best HMM Match : GRP (HMM E-Value=0.61)                        28   4.8  
SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_42025| Best HMM Match : HTH_AraC (HMM E-Value=0.038)                27   8.4  

>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
          Length = 1624

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 455 RRPFQFHQDRWASKGSAKRGGIC*QLPERLRRRPNNSR 342
           +RPF +  DRWA  G A  GG+     E  RRR +  R
Sbjct: 155 KRPFLYRGDRWAGHGGA--GGV----HEAARRRDHRKR 186


>SB_253| Best HMM Match : GRP (HMM E-Value=0.61)
          Length = 356

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 488 FFFMIESLLVARRPFQFHQDRW 423
           F FM E LL    P +FH +RW
Sbjct: 213 FVFMSEKLLEHEDPAEFHNNRW 234


>SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 281 RIFSAGRDSDPVVDS-FAKQLLLSC*VSFGGARAVVSKSHPSWLS 412
           +I++ G   +PV D  F  QL +S   SFGG R+ +++ +PS +S
Sbjct: 724 KIYNLG-SKNPVFDGHFTNQLAIS---SFGGERSDIARLYPSPIS 764


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 405  QEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEK 286
            Q+ W L   A   P +  Q+   CF  E TT +    +EK
Sbjct: 1405 QDKWFLFNDAEVKPFDPSQIAGECFGGEMTTKTYDVVSEK 1444


>SB_42025| Best HMM Match : HTH_AraC (HMM E-Value=0.038)
          Length = 318

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 63  ADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAF 170
           A YSP   +   S R  PRH  + P+   TFA+  F
Sbjct: 230 ARYSPRKTNKTDSIRTFPRHERSSPTGSYTFAVAEF 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,446
Number of Sequences: 59808
Number of extensions: 266369
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)