Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0400
(493 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 31 0.45
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 29 1.4
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 29 1.4
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 27 5.6
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 27 5.6
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 27 5.6
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 27 5.6
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 27 5.6
AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical ... 27 7.4
AL117203-10|CAB60424.2| 855|Caenorhabditis elegans Hypothetical... 27 9.8
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 31.1 bits (67), Expect = 0.45
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 75 PNPDHAGASHRRRPRHVLTDPSD 143
PN DH G +H RR R+ DPSD
Sbjct: 242 PNVDHIGHNHHRRKRNHDDDPSD 264
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 75 PNPDHAGASHRRRPRHVLTDPSD 143
PN DH G +HRR+ H DPSD
Sbjct: 198 PNVDHTGHNHRRKRNHD-DDPSD 219
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3
Query: 75 PNPDHAGASHRRRPRHVLTDPSD 143
PN DH G +HRRR R DPSD
Sbjct: 287 PNVDHTGHNHRRR-RDQDDDPSD 308
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 75 PNPDHAGASHRRRPRHVLTDPSD 143
PN DH G +HR + R + DPSD
Sbjct: 132 PNVDHTGHNHRVK-RSIDDDPSD 153
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = -2
Query: 432 GQVGEQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRR-ETQRVDA 256
G+VGE++ S++ D++ + AP E + ++ ++ T E AEK + +R++
Sbjct: 164 GEVGEKKESEQPTDMVEPSSAPTTEETETENEEEDDKEKTDKEKLDAEKEKALAEKRLER 223
Query: 255 WVRLHVDLFVEFDE 214
+L+ DL D+
Sbjct: 224 EQKLYKDLKSSSDD 237
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = -2
Query: 432 GQVGEQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRR-ETQRVDA 256
G+VGE++ S++ D++ + AP E + ++ ++ T E AEK + +R++
Sbjct: 164 GEVGEKKESEQPTDMVEPSSAPTTEETETENEEEDDKEKTDKEKLDAEKEKALAEKRLER 223
Query: 255 WVRLHVDLFVEFDE 214
+L+ DL D+
Sbjct: 224 EQKLYKDLKSSSDD 237
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 9 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 140
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 368 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 411
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 9 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 140
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 443 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 486
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 9 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 140
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 377 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 420
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 9 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 140
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 521 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 564
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 9 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 140
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 368 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 411
>AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical
protein C49G7.7 protein.
Length = 893
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -2
Query: 369 PPKET*QLKSNCFANESTTGSESRPAEKIRRETQRVDAWVRLHVDLFVEFDE 214
PPK +L++N F S+ R RR + +D W L + + DE
Sbjct: 801 PPKNYEKLRNNDFNPVSSFRKGHRVISHWRRTDEMLDIWFALRYEELEDLDE 852
>AL117203-10|CAB60424.2| 855|Caenorhabditis elegans Hypothetical
protein Y48C3A.14 protein.
Length = 855
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 323 SFAKQLLLSC*VSFGGARAVVSKSHPSWLSLCSPTCPGETG 445
S + + C GG + ++SHP W C+ CP G
Sbjct: 710 SISSNGVCGCLQDCGGVMLLDTQSHPKWRMTCN-KCPSVVG 749
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,238,464
Number of Sequences: 27780
Number of extensions: 191774
Number of successful extensions: 556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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