Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0399
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.0
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 5.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 5.2
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 5.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.1
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 9.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 9.1
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 25 9.1
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 550 SSFDSTAVTEQSSITPT--PLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS 380
S F S+ T S I+ + P + +S+ + S SP+ + STSSTFS + S
Sbjct: 551 SDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTS 609
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 97 SLIFLYCEEWVQGVAGIHQALLEHSSQHLL 186
S ++LY EW+ + LL S+HLL
Sbjct: 1115 SQVYLYLREWINALFDRFTFLLGKESEHLL 1144
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 565 LPDTLSSFDSTAVTEQSSITPTPLSVASL 479
LP+ SF S + ++++TPTP S ++
Sbjct: 388 LPNPFISFPSFQTSYETTVTPTPTSTPTI 416
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = -1
Query: 568 PLPDTLSSFDSTAVTEQSSIT--PTPLSVASLIRDIQSKCGSPTPSPG-IHRPPSTSST 401
P P SS A++ SS++ P P AS+ + P P G + PP+ S T
Sbjct: 886 PFPGA-SSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGT 943
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -1
Query: 292 LVLANNSEPHC 260
+VLAN+SEPHC
Sbjct: 2113 MVLANDSEPHC 2123
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 288 TRDRMTVYRRMKSQSVSWSIDCDLVTPK 371
+ D T ++ K +SVSW D DLV K
Sbjct: 493 SNDEKTGNKKRKKKSVSWKPDNDLVQVK 520
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 9.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -1
Query: 550 SSFDSTAVT---EQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS 380
SSF ++ V+ +QSS + L+ +S S SPT S H S+SS+ ++S
Sbjct: 77 SSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSS 136
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -1
Query: 526 TEQSSITP---TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSST 401
T S TP +PL V S + + +PTP+P ++ SST
Sbjct: 591 THSSRPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPESST 635
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -1
Query: 562 PDTLSSFDSTAV---TEQSSITPTPLSVASLIRDIQSKCGS 449
P+T+++ +T T ++ TPTP + ++ ++ ++CGS
Sbjct: 929 PNTVTTTKATTTFTPTPTTTTTPTPTTTSATSTNVIAQCGS 969
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -1
Query: 568 PLPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPS 437
PL TL S++ A E S P+P V R S SPT S
Sbjct: 475 PLQSTLPSYEDVARIEHLSRPPSPGIVTPPQRTSPSFFVSPTES 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,117
Number of Sequences: 5004
Number of extensions: 54970
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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