Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0399
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 37 0.015
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224... 32 0.33
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 32 0.44
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35... 31 0.58
04_04_0797 - 28137656-28137836,28138082-28138207,28138364-28138422 31 0.77
01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878 30 1.8
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 2.3
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 29 3.1
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 29 3.1
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635 28 7.1
12_01_0150 + 1155658-1156087,1156319-1156383,1156506-1156569,115... 27 9.4
07_03_1544 - 27585581-27585757,27585986-27586091,27586246-275863... 27 9.4
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 36.7 bits (81), Expect = 0.015
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Frame = +3
Query: 126 GAGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEARG-----RPTGWKQCGSLLLART 290
G G W S G+ LA VR Q L E++ G GW + GSLL+ RT
Sbjct: 108 GQGYLWMSHRTPGSDTWELA-VRSKQLWEELAAEVDGLGGGGARERLGWMRTGSLLVGRT 166
Query: 291 RDRM-TVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVLGGLWIPGD 440
+ M T+ R K+ S + I + ++ H L P L V G +++P D
Sbjct: 167 SEEMATLEERTKALSQA-GIRAECLSAASLHALEPELYVGHDGGAMFLPED 216
>02_01_0327 -
2241228-2242509,2243227-2243247,2243299-2243614,
2244232-2244496,2245887-2245985
Length = 660
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 153 GLVGAFKPTLAQVRLAQSSIRLLKELEARGRPTG--WKQCGSLLLARTRDRM 302
G A +P LA V A +L + EA RP G W +CG+++L +D++
Sbjct: 277 GSAAADRPRLAPVAAAMVDAQLPRAGEAIYRPQGHGWGRCGAMILGGGKDKV 328
>05_03_0104 -
8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 31.9 bits (69), Expect = 0.44
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 123 VGA-GSRWHSSGLVGAFKPT-LAQVRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRD 296
VGA GSR G G +P+ + + ++Q S + L+ G G + C SLLL R
Sbjct: 95 VGAVGSRHDDGGGSGVVRPSGVTSIPVSQKSTNPFQGLDLAGERQGQQSCASLLLQAKRR 154
Query: 297 R 299
R
Sbjct: 155 R 155
>12_01_0045 -
354825-355504,355602-355776,355847-355927,357266-357498,
357921-358104
Length = 450
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -2
Query: 468 YRANAGLLHHHL----ESTGLQAHLQHSALEIIHDISLV*LSH 352
YR G LH H+ E+TG Q + HS LE +H I++ ++H
Sbjct: 394 YRICDGQLHIHILDNHETTGPQRWIHHSELEEVHTITVERINH 436
>04_04_0797 - 28137656-28137836,28138082-28138207,28138364-28138422
Length = 121
Score = 31.1 bits (67), Expect = 0.77
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 377 TFLWCN*VTIYAPRYRLTFHSSVNSHAVSCSCQ 279
+ +W T+ A R+R F S++ H C+CQ
Sbjct: 25 SIMWVKDPTMIAVRWRRAFRSAIQKHMALCNCQ 57
>01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878
Length = 474
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -1
Query: 535 TAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIG 389
T +T + +T +P++V++L+ + G+H+ + SST S+G
Sbjct: 109 TYITVGAEVTESPVNVSALVVPAMRNVHTALKKAGLHKKITISSTHSLG 157
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 553 LSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFS 395
LSS DS T++ P+P++ + I++ SP PSP P S++ S
Sbjct: 53 LSSSDSD--TDEPPARPSPIAQLKTLASIRAPAPSPKPSPSPSPSPRRSTSAS 103
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 29.1 bits (62), Expect = 3.1
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +3
Query: 318 MKSQSVSWSIDCDLVTPKKCHEL-FPMLNVEDVL-----GGLWIPGDGVGDPHLLCMSLM 479
+K Q + ID + + L PM+N VL GG+ P GVG + MSL
Sbjct: 248 IKDQQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGG---IAMSLA 304
Query: 480 REATDKGVGVMEDCSVTAVLSKDDKVSG 563
DKG + +VT V+ ++ K G
Sbjct: 305 DGLVDKGSEIRYKANVTNVILENGKAVG 332
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 453 GLLHHHLESTGLQAHLQHSALEIIHDI 373
GL+ HHLE G HL++ +L H+I
Sbjct: 810 GLVDHHLEHIGKLVHLRYLSLRECHNI 836
>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
Length = 819
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = -2
Query: 555 LCRLSIAQLSQNNLPSHPHLYQLLLS*ETYRANAGLLHHHLESTGLQAHLQHSALEIIHD 376
L L A S ++LPSH HL LS + +A H S+ L L + L ++H
Sbjct: 107 LLSLRSASASLSSLPSHLHLLSSHLSLLSSHLSAPRAHLAHSSSSLSTLLSTADL-LLHS 165
Query: 375 ISLV*LSHNLCST 337
LV LS L ++
Sbjct: 166 HRLVRLSSRLLTS 178
>12_01_0150 +
1155658-1156087,1156319-1156383,1156506-1156569,
1156988-1157115
Length = 228
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 256 HPVGLPRASSSLRSLIEDWASLT*ASVGLNAPT--RPDECQRLPAP 125
H + LP SS +S + A++ S+ ++PT RP C LP P
Sbjct: 33 HCISLPLLSSEHKSQTQMEAAVATPSLLFSSPTPRRPSSCLSLPPP 78
>07_03_1544 -
27585581-27585757,27585986-27586091,27586246-27586338,
27587840-27587958,27588486-27588746,27589226-27589515,
27589624-27590152
Length = 524
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 502 TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFS 395
+P S ASL D + SP+PS G H P+ ++ S
Sbjct: 45 SPSSWASLAEDRGAPAPSPSPSGGRHAAPAAAAVGS 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,275,455
Number of Sequences: 37544
Number of extensions: 391335
Number of successful extensions: 1179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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