Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0399
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   2e-22
SB_6288| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.15 
SB_17506| Best HMM Match : DUF755 (HMM E-Value=0.72)                   32   0.45 
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)                 30   1.4  
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    29   3.2  
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      28   5.5  
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)                 28   5.5  
SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)                28   5.5  
SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)                28   7.3  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               27   9.7  
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)                      27   9.7  
SB_5444| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score =  103 bits (246), Expect = 2e-22
 Identities = 50/145 (34%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
 Frame = +3

Query: 120 RVGAGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRD 296
           ++ +G+ WHS+GL+   +P+  +V +   +  L K LE   G   GW + G L +A  ++
Sbjct: 142 KLTSGTTWHSAGLLWRLRPSDQEVEIIGHTRDLAKSLEEETGVSPGWIENGGLFIANNKE 201

Query: 297 RMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSL 476
           R+  Y+R+ +    + ID  ++ PK   EL+P++NV+D+ G L+ PGDG  DP     +L
Sbjct: 202 RLDEYKRLMTLGHCYGIDSHVLDPKATKELYPLMNVKDLYGTLYSPGDGTIDPAGWASAL 261

Query: 477 MREATDKGVGVMEDCSVTAVLSKDD 551
            R AT +G  V E+C VT + ++ D
Sbjct: 262 TRGATKRGAKVFENCPVTGITTEVD 286


>SB_6288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 562 GVETTNGAIECDYFINCAG 618
           GV+T  G I+CD FINCAG
Sbjct: 98  GVKTDKGDIKCDIFINCAG 116


>SB_17506| Best HMM Match : DUF755 (HMM E-Value=0.72)
          Length = 256

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 180 LAQVRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRDRMTVYRRMKSQSVSWSIDC 353
           L  V+ AQS +R  K  +   +  G ++C  +L A  R R    R+ K + VS  IDC
Sbjct: 183 LLWVKAAQSELRSAKHYKDLVKDLGVQECDGVLSASKRKRKR-KRKRKRKKVSKEIDC 239


>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
          Length = 1427

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 556 TLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPT 443
           TLSS  S+  +E SS  PTP  +  L+ + QS   +P+
Sbjct: 211 TLSSSSSSGESEASSPVPTPKGLFDLLHEEQSSAEAPS 248


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 541 DSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS 380
           D     E++  TP P +  S  +      G  TP+PG   PPS  +T S G  +
Sbjct: 228 DKGGAKEEAKTTPAPEN--SSTKPGAESGGETTPAPGATTPPSEETTPSAGGTT 279


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -1

Query: 568 PLPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSST 401
           P   T S +++ AV   SSI+P+P    S + +  +   +PT SP    P  T+S+
Sbjct: 413 PNGTTSSVYETIAVNSTSSISPSPNGTTSSVYETIAVNATPTISPS---PNGTTSS 465



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -1

Query: 568 PLPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSST 401
           P   T S +++ AV   SSI+P+P    S + +  +   +P+ SP    P  T+S+
Sbjct: 459 PNGTTSSVYETIAVNSTSSISPSPNGTTSSVYETIAVNSTPSISPS---PNGTTSS 511



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -1

Query: 568 PLPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSST 401
           P   T S +++ AV    SI+P+P    S + +  +   +PT SP    P  T+S+
Sbjct: 551 PNETTSSVYETIAVNSTPSISPSPNGTTSSVYETIAVNATPTISPS---PNGTTSS 603


>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -1

Query: 559 DTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 407
           D  S++++ AV    +I+P+P    S + +      +PT SP ++   S++
Sbjct: 580 DNYSAYETIAVNATPTISPSPNGTTSSLYETIDVNATPTISPSLNETTSSA 630



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -1

Query: 556 TLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 398
           T S++++ AV    +I+P+P    S + +      +PT SP  H   +TSS +
Sbjct: 627 TSSAYETIAVNATPTISPSPNGTTSSVYETIDLNATPTISPSPH--GTTSSVY 677



 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -1

Query: 556 TLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 407
           T S++++ AV    +I+P+P    S + +      +PT SP ++   S++
Sbjct: 512 TSSAYETIAVNATPTISPSPNGTTSSLYETIDVNATPTISPSLNETTSSA 561


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 562 PDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRP 419
           PDT+     T V+E +S T  P        D      SP+P+ G  +P
Sbjct: 783 PDTIEKQGITPVSESASSTSQPQKNQKSYSDPSQAQSSPSPAQGTAQP 830


>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
          Length = 665

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 565 LPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSS 404
           +P+T ++ D+T V E +    T L+  + I    +     T +P I   P TS+
Sbjct: 499 VPETTAASDTTVVPETTDAPATTLAPKTTIAPETTVAQETTDAPAITMAPETSA 552


>SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)
          Length = 407

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 513 PSHPHLYQLLLS*ETYRANAGLL--HHHLESTGLQAHLQHSALEIIHDISLV*LSHNLCS 340
           P+H  + Q +   ++Y  ++ ++  HH L S  +  H   S +   H  S + +SH+  +
Sbjct: 294 PAHYRVIQYISYYQSYHRSSSVINSHHQLTSVNIIQHQSTSVIIAYHQSSSLIISHHQST 353

Query: 339 TI 334
           ++
Sbjct: 354 SV 355


>SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)
          Length = 882

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = -1

Query: 565 LPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIH 425
           L ++ S+   T  T    ITP   S A+L  D  S  GSP PSP IH
Sbjct: 631 LSESGSADQDTEGTGGVPITPQGDSGANLTTDTSSTGGSPWPSP-IH 676


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 559 DTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 398
           ++++S     V    S+TP P S +     ++ K  SP P    H+PP   + F
Sbjct: 689 ESVASCSEDQVYSVPSLTPRPRSSSDTYEPVEPKAYSPKP----HQPPPRPAPF 738


>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
          Length = 1248

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 559 DTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 398
           ++++S     V    S+TP P S +     ++ K  SP P    H+PP   + F
Sbjct: 468 ESVASCSEDQVYSVPSLTPRPRSSSDTYEPVEPKAYSPKP----HQPPPRPAPF 517


>SB_5444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 573 SFHSQTLCRLSIAQLSQNNLPSHPHLYQLLLS 478
           +FH+  LC LS + L +NNL     L  LLL+
Sbjct: 134 TFHTFGLCGLSNSSLRRNNLAKEKELGLLLLT 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,677,768
Number of Sequences: 59808
Number of extensions: 439611
Number of successful extensions: 1107
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)