Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0399
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical... 49 2e-06
AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical... 49 2e-06
AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical ... 46 3e-05
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am... 31 0.52
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am... 31 0.52
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 31 0.69
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 31 0.91
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 30 1.2
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 2.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 29 3.7
AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormo... 29 3.7
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 29 3.7
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 29 3.7
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 4.9
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 6.4
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 28 6.4
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 28 6.4
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 27 8.5
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 27 8.5
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 27 8.5
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 27 8.5
>AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical
protein Y37E3.17a protein.
Length = 830
Score = 49.2 bits (112), Expect = 2e-06
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Frame = +3
Query: 129 AGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDRMT 305
+G+ +HS GLV A P + SI L +LEA G ++ G++ LA R+
Sbjct: 67 SGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLA 126
Query: 306 VYRRMKSQSVSWSID-CD--LVTPKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSL 476
+R+ ++ D C L+TP + EL P ++ +LG L DG L +L
Sbjct: 127 EFRKYVNRDYYKEGDVCKTTLLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQAL 186
Query: 477 MREATDKGVGVME 515
+ A + G V++
Sbjct: 187 VVGAKNGGAQVID 199
>AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical
protein Y37E3.17b protein.
Length = 837
Score = 49.2 bits (112), Expect = 2e-06
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Frame = +3
Query: 129 AGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDRMT 305
+G+ +HS GLV A P + SI L +LEA G ++ G++ LA R+
Sbjct: 74 SGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLA 133
Query: 306 VYRRMKSQSVSWSID-CD--LVTPKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSL 476
+R+ ++ D C L+TP + EL P ++ +LG L DG L +L
Sbjct: 134 EFRKYVNRDYYKEGDVCKTTLLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQAL 193
Query: 477 MREATDKGVGVME 515
+ A + G V++
Sbjct: 194 VVGAKNGGAQVID 206
>AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical
protein Y106G6H.5 protein.
Length = 855
Score = 45.6 bits (103), Expect = 3e-05
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
Frame = +3
Query: 129 AGSRWHSSGLVGA--FKPTLAQVRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRDRM 302
+G+ S+GLV + F + +AQ+S+ L L + + +CG LA +
Sbjct: 58 SGATGLSAGLVSSPIFWQDTSLQAIAQASLDLYSHLATTCK-FRYIKCGRTYLASSMANE 116
Query: 303 TVYRRMKSQSVSWSIDCDLVT-PKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSLM 479
+ RRM S+ V + +L+ + E +P L EDV L+ P D DP LC L
Sbjct: 117 ILLRRMYSRGVVHNDKVELLDCQSEMLERWPFLQTEDVQLALFSPEDVALDPVALCQHLA 176
Query: 480 REATDKGVGVMEDCSVTAVLSKDDK 554
A D G + E V V D+K
Sbjct: 177 LIAKDYGALIYESNPVLEVHIGDEK 201
>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform a protein.
Length = 1212
Score = 31.5 bits (68), Expect = 0.52
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -1
Query: 565 LPDTLSSFDS--TAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFS 395
LP T FD T + E+ + + +P AS RD+ +PTP+ I+RP S+ S+FS
Sbjct: 559 LPTTSIQFDDRLTVIVEEDTPSDSPAPDASP-RDLPE---TPTPTSPIYRPLSSLSSFS 613
>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform b protein.
Length = 1454
Score = 31.5 bits (68), Expect = 0.52
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -1
Query: 565 LPDTLSSFDS--TAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFS 395
LP T FD T + E+ + + +P AS RD+ +PTP+ I+RP S+ S+FS
Sbjct: 559 LPTTSIQFDDRLTVIVEEDTPSDSPAPDASP-RDLPE---TPTPTSPIYRPLSSLSSFS 613
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 451 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 362
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 52 APMPSQKILPPPTTSAPSNSGNNSINYMGV 81
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 451 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 362
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 113 APMPSQKILPPPTTSAPSNSGNNSINYMGV 142
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 451 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 362
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 77 APMPSQKILPPPTTSAPSNSGNNSINYMGV 106
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 30.7 bits (66), Expect = 0.91
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 568 PLPDTLSSFDSTAVTEQSSIT-PTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSI 392
P P + + A EQ+ + P P VA+ D++ CGS P+P P +T S +
Sbjct: 232 PAPAAAAPAPADAPVEQAPVAVPAPAPVAA--PDVE--CGSAAPAPAAAAPAATDSGYRS 287
Query: 391 GNNS 380
NS
Sbjct: 288 KRNS 291
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -1
Query: 565 LPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGS-PTPSPGIHRPPSTSST 401
+P T+ + STAVT+ S++ P +V ++ + +K + T SP + P+T T
Sbjct: 317 VPSTVVTVPSTAVTKPSTVVTAPSTVVTVPSTVVTKPNTVVTSSPTVATTPTTVVT 372
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -1
Query: 556 TLSSFDSTAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIG 389
T ++ STAVT SS+ +P P S+++ I S S +PS P S+ +I
Sbjct: 221 TAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQ 280
Query: 388 NNS*HF-FGVTKSQSMLHDT 332
++S F V S S + T
Sbjct: 281 SSSGTFPSSVASSPSTVGST 300
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -1
Query: 556 TLSSFDSTAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIG 389
T ++ STAVT SS+ +P P S+++ I S S +PS P S+ +I
Sbjct: 221 TAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQ 280
Query: 388 NNS*HF-FGVTKSQSMLHDT 332
++S F V S S + T
Sbjct: 281 SSSGTFPSSVASSPSTVGST 300
>Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical
protein M04B2.4 protein.
Length = 527
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 267 GSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDV-LGGLWIPGDG 443
G L LA+T + + + R + L++ + + +P +NV+DV L L + +G
Sbjct: 187 GYLRLAKTDEEVEMMRSAWKVQIERGAKVQLLSKDELTKRYPYMNVDDVLLASLGVENEG 246
Query: 444 VGDPHLLCMSLMRE 485
D L +S +RE
Sbjct: 247 TIDTWQL-LSAIRE 259
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 312 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 416
++MKS + S SID L +P C P+ N EDV+
Sbjct: 127 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 159
>AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform c protein.
Length = 235
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 312 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 416
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 312 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 416
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 312 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 416
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -1
Query: 538 STAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS*HF 371
STAVT SS+ +P P S+++ I S S +PS P S+ +I ++S F
Sbjct: 20 STAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQSSSGTF 79
Query: 370 -FGVTKSQSMLHDT 332
V S S + T
Sbjct: 80 PSSVASSPSTVGST 93
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -1
Query: 568 PLPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSST 401
P+P T + S T S+ TP+P + S G PT S P ST +T
Sbjct: 365 PIPSTTQTSSSAPSTYTSNFTPSPTTTLLTSTIAPSTQGVPTSSKS-SSPNSTPTT 419
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = -1
Query: 565 LPDTLSSFDSTAVTEQSSITP---TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF- 398
+P T ++ ST+ ++ TP T + + + S SPT SP P+T++T
Sbjct: 282 VPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEPEPTTTATVL 341
Query: 397 --SIGNNS*HFFGVTKSQSMLHDT 332
++ N S G+ ++L++T
Sbjct: 342 APTLKNLSDSGVGINNVSTVLNET 365
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = -1
Query: 565 LPDTLSSFDSTAVTEQSSITP---TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF- 398
+P T ++ ST+ ++ TP T + + + S SPT SP P+T++T
Sbjct: 264 VPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEPEPTTTATVL 323
Query: 397 --SIGNNS*HFFGVTKSQSMLHDT 332
++ N S G+ ++L++T
Sbjct: 324 APTLKNLSDSGVGINNVSTVLNET 347
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 541 DSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS 380
DS + S+ P+ ++ I K TPSP + + PS+SS+ S ++S
Sbjct: 341 DSVSTRRSSTTWEVPIRPTTMNSQISRK---RTPSPVVRKAPSSSSSNSTSSSS 391
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 588 DCTICSF-HSQTLCRLSIA-QLSQNNLPSHPHLYQLLL 481
D T ++ + + L RL +A QLSQ +HP+ QLLL
Sbjct: 279 DVTSANYGNPEKLARLKLAIQLSQKRFVAHPNCQQLLL 316
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 588 DCTICSF-HSQTLCRLSIA-QLSQNNLPSHPHLYQLLL 481
D T ++ + + L RL +A QLSQ +HP+ QLLL
Sbjct: 279 DVTSANYGNPEKLARLKLAIQLSQKRFVAHPNCQQLLL 316
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 588 DCTICSF-HSQTLCRLSIA-QLSQNNLPSHPHLYQLLL 481
D T ++ + + L RL +A QLSQ +HP+ QLLL
Sbjct: 279 DVTSANYGNPEKLARLKLAIQLSQKRFVAHPNCQQLLL 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,249
Number of Sequences: 27780
Number of extensions: 327224
Number of successful extensions: 1033
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -