Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0398
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.17
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 0.88
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 0.88
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 2.0
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 26 2.0
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 25 3.6
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 4.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 4.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 6.2
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 24 8.2
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 24 8.2
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 24 8.2
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.9 bits (64), Expect = 0.17
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 155 KSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDL 271
K ++VDS + L EDL+ + AL + E + LR++
Sbjct: 680 KQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREV 718
Score = 25.4 bits (53), Expect = 3.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 152 SKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRD 268
S V S +EC S ++S Q LTS A +L D
Sbjct: 1650 SLEDSVASLQKECKIKSNTVESLQDVLTSVQARNAELED 1688
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.5 bits (58), Expect = 0.88
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Frame = +2
Query: 137 PLITTSKSQEVDSKSRECDQLSEDLQSKQSALT---SAT-------AELQQLRDLSAHQR 286
P++ S++ + + EC+QL +LQ+ Q +L S T AEL+ H R
Sbjct: 811 PILEKSEN-DYNGVKLECEQLEGELQNHQQSLVQGESTTSLIKTEIAELELSLVNEEHNR 869
Query: 287 KRIAELL-------TNLLRDLAEIGAAVGGSELDFKLNVDTVRKLEEEF 412
K++ EL+ + L +++ + ++ E + T++KL EF
Sbjct: 870 KKLTELIEIESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQKLNHEF 918
>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 0.88
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +2
Query: 164 EVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAELLTNLLRDLAEIGA 343
EVD + + L LQS+ S ++S +ELQ + + +K+ L + + E
Sbjct: 85 EVDYHGKSLEILDMLLQSRNSMISSLRSELQ---EKNQKDKKKEVNKLEEKMTNAKEPNV 141
Query: 344 AVGGSELDFKLNVDTVRKLEEE 409
V + ++V+T +E E
Sbjct: 142 NVPSMKASSAISVETPETIESE 163
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/58 (22%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 137 PLITTSKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLS-AHQRKRIAELL 307
P+I+ ++E+ + +L ED+++ + +T+ T +L+ + LS AH + + ++
Sbjct: 737 PVISEEAAKELVNAYVGMRKLGEDVRASEKRITATTRQLESMIRLSEAHAKMHLRNVV 794
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 2.0
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +2
Query: 158 SQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAELLTNLLRDLAEI 337
+QEV+ + QL+ DL+ + + + AE Q +S R R+ ELL++ ++A++
Sbjct: 488 AQEVEYYASLVKQLTSDLEERDTYIAMLEAERSQGTAIS-RARLRMEELLSDHNFEIADL 546
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 3.6
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 19 LPAQGAIMRRYKET*IESNKQNEAAKEEVKEVLQALEELAVNYDQQ 156
LP ++ I+ ++ EAAKEE +E+ + +E+L D++
Sbjct: 335 LPTSIIVINERDAEIIKKEEELEAAKEEEEEIWRNMEQLEDTEDKK 380
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 4.7
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +2
Query: 155 KSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAELL 307
+++++ S+ EC QL ++++ +L + +L DL++ ++ I ELL
Sbjct: 1995 ENKQMSSQLHECFQLLLEIRNVLLSLLQSHKQLDLSDDLASFRKYYILELL 2045
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 4.7
Identities = 20/83 (24%), Positives = 31/83 (37%)
Frame = +2
Query: 161 QEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAELLTNLLRDLAEIG 340
+EV+ + E QLSE K LQ L + + ++ +NLL L
Sbjct: 599 EEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTE 658
Query: 341 AAVGGSELDFKLNVDTVRKLEEE 409
A V + + N + E E
Sbjct: 659 AEVDSLRKENEENKQVIALKESE 681
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 24.6 bits (51), Expect = 6.2
Identities = 16/69 (23%), Positives = 36/69 (52%)
Frame = +2
Query: 197 LSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAELLTNLLRDLAEIGAAVGGSELDFKL 376
+ + ++ K++ L ELQ+L + +K+I++ +L+ D ++ +G + K
Sbjct: 635 IKQRIEQKKTRLMILREELQELDAIKEEAQKQISQ---SLIAD-QQLSTQIGSVGMGKKQ 690
Query: 377 NVDTVRKLE 403
V +RKL+
Sbjct: 691 AVKELRKLQ 699
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 368 SRAQILRRQLLSRRDLEVSLSIIPRCVFVDVQ 273
S +Q+L R+LL D ++ P V VD+Q
Sbjct: 54 SWSQVLSRELLKNIDTSIAADEKPMIVAVDLQ 85
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 24.2 bits (50), Expect = 8.2
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 52 KET*IESNKQNEAAKEEVKEVLQ-ALEELAVNYDQQVAGGRQQESRVRS 195
KET +E ++NEA E V + + ALEE V + +V ++E+ ++S
Sbjct: 399 KETEVERKEENEAEAEAVFDDWEAALEEPEVAENNEVV-TEKKETDIKS 446
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 366 SSSDPPTAAPISARSRSKFVNNS 298
SSS +A+P S++S SKF ++S
Sbjct: 203 SSSSKSSASPSSSKSSSKFSSSS 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,803
Number of Sequences: 5004
Number of extensions: 17556
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -