Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0398
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   0.79 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   7.4  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 255 NNFVIYLHINENASRNY*QTYFEISPR*ELP 347
           NN+  Y + N N + NY + Y+ I+   ++P
Sbjct: 332 NNYNNYNNYNNNYNNNYKKLYYNINYIEQIP 362


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 221 VWIASLQ---TADRTRDSCCLPPATCWS*LTASSSRACRTSL 105
           +W+  +    + D T D   +PP TC   + +S S +C  S+
Sbjct: 124 IWVPDISVYNSGDMTFDQTGIPPTTCL--VFSSGSVSCVPSV 163


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/49 (18%), Positives = 26/49 (53%)
 Frame = +1

Query: 40  MRRYKET*IESNKQNEAAKEEVKEVLQALEELAVNYDQQVAGGRQQESR 186
           +R +K      + +NE  ++E++++ +   E   + D+  +  +QQ+ +
Sbjct: 48  LRNHKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQ 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,594
Number of Sequences: 438
Number of extensions: 1641
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)