Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0397
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 37 0.020
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061) 31 0.76
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 31 1.0
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0) 30 1.8
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0) 30 1.8
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) 30 2.3
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045) 30 2.3
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21) 29 3.1
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 29 4.1
SB_45888| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.4e-25) 28 7.1
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 407 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 547
E P EA+S D KVE P + E + EV+ATV E+ + +A E
Sbjct: 22 ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAPMEEAAASVE 68
>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
Length = 410
Score = 31.5 bits (68), Expect = 0.76
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +2
Query: 416 DAEAKSADIKVEEPAAQPEDSKT----EVQATVAEISKEEKPSATDAEGSADSAAIIP 577
DAE S+ I V P+AQ E +T V + +A ++ E D+ D AIIP
Sbjct: 285 DAEPASSSISVSVPSAQAEQGRTTEGRPVSSDIATVAMEVPEVQGDSLADVDIDAIIP 342
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +2
Query: 425 AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDL 601
AKS D+K E A++ ++ T+ ++ K+ KP++ + A +A + N K +++
Sbjct: 1912 AKSKDVKNAEEASRNDEDDTKTGNVSEDLIKQAKPTSKTRKKRASLSAKVTNFEKTVNV 1970
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 401 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATD-AEGSAD 559
++E+P +A ++ + E PAA+PE + E +A V + + EE + + AE D
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVEDDAFEEPEALNEKAEDPKD 640
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 419 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP-SATDAEGSADSA 565
A + A++ +EE Q ED++ V+ A + K E P T+A D A
Sbjct: 1172 ASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAPVEETEAPFEEDEA 1221
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +2
Query: 446 VEEPAAQPEDSKTEVQATV--AEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAP 607
+E PA ED KT+ +AT AE+ +E KP+A D + SA S ++ I+++P
Sbjct: 1129 LESPA---EDVKTDFEATSLEAEVFEEYKPTAKDVKESASSTV---HLAADIEISP 1178
>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
Length = 926
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 398 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 577
K++ +P+A +A + E AQPE K E + + + + T A+ A A P
Sbjct: 393 KATALPEAPKATAQPEAPEATAQPEAPKATALPEAPEATAQPEATETTAQPKAQKATAQP 452
>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
Length = 636
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +2
Query: 398 KSSEIPDAEAKSADIKVEEPAA-QPEDSKT-EV---QATVAEISKEEKPSATDAEGSADS 562
K + D + S+D +E A +P S T EV T A + EE+PS TD EGS +
Sbjct: 359 KQTTAHDPTSSSSDQLIEHSVAGRPSPSVTPEVAREDCTQASLQLEERPSNTDGEGSGQT 418
>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
Length = 1188
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 413 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAA 568
PD +A + + + + P +Q EDS + T +S EE+P ++ S SAA
Sbjct: 915 PDPQAPATNNQTDNPPSQYEDSSS--SETNGVLSDEEQPPLPLSDSSIQSAA 964
>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
Length = 191
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 404 SEIPDAE-AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 556
S++P + AK+A+ + E+ A PE+ E A E K ++ D EG+A
Sbjct: 50 SKMPSKKGAKAAEAQPEKKAEAPEEKPAEDSKDQAVEESETKDASKDGEGNA 101
>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
Length = 595
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 528 GFSSFEISATVACTSVFESSG*AAGSSTLISADFASASGISDDF 397
G SS ++ +C+SVFE + A SS L AD + + IS ++
Sbjct: 498 GGSSSQMDVMGSCSSVFEQAMLAGESSNLSDADKSESKDISKNY 541
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 398 KSSEIPDAEAKSADIKVEEPAA-QPEDSK-TEVQATVAEISKEEKPSA-TDAEGSADSAA 568
K + D E K + + E+ + E +K TEVQ V E +KEE PS DAE A
Sbjct: 1025 KKRKDSDKERKVKEKEEEQKVKIEKEPNKVTEVQLMVEETNKEESPSTDRDAESELPKAG 1084
Query: 569 IIPNMVKKIDLAP 607
+ ++ P
Sbjct: 1085 SVSALLSVFATEP 1097
>SB_45888| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.4e-25)
Length = 561
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 56 KSGVASQGSIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDS 214
K+GV S I ++ +++L I ++ VS A EE+ +PIL++ DD+
Sbjct: 39 KAGVISSKLILRL-LIVLSIRYSLVSGACVEMEERKAGAKEPILDIRVLPDDN 90
>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1918
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +2
Query: 431 SADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII--PNMVKKI 595
SA + A++ D ++++ + A+ K+E+ SAT + ++S+ ++ P+ ++KI
Sbjct: 196 SATHRTLSAASRDLDKRSDISLSSAKPEKQEQESATVEQPESESSTMVLYPHQIQKI 252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,367
Number of Sequences: 59808
Number of extensions: 291691
Number of successful extensions: 1145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -