Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0395
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.044
UniRef50_UPI0000ECA406 Cluster: UPI0000ECA406 related cluster; n...    34   2.9  
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    34   2.9  
UniRef50_UPI0000E46F13 Cluster: PREDICTED: similar to CG33141-PB...    33   5.1  
UniRef50_Q73NR6 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  
UniRef50_Q22BB9 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 40.3 bits (90), Expect = 0.044
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 45  AGWWYLPVRTHKRSYHQ 95
           A WWYLP RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_UPI0000ECA406 Cluster: UPI0000ECA406 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECA406 UniRef100 entry -
           Gallus gallus
          Length = 167

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 119 VPKSTVN-GSGGNFAQHPTFIFG-IKGPFHSVSASTVRCF 232
           VP S V+ G G   AQ P  +F  +  PFHS+  S  RCF
Sbjct: 35  VPSSGVSCGQGAVPAQRPLVLFSRVAAPFHSIQGSVSRCF 74


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=25; Arthropoda|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 986

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = +2

Query: 470 LTLHPSVGIGILGVDIVNSI*HRRQL*GNIK*AFKTPGSPQQSEAVFFTKHKLAL 634
           ++L PS  IGILGVDI + +  R  L G  K A K  G   +++  F    +L L
Sbjct: 767 VSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLL 821



 Score = 34.3 bits (75), Expect = 2.9
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +1

Query: 610 LYKAQVGPLMLHCSHLWTRVSGDQLLSND 696
           LYKAQV P + +CSHLW      QLL  D
Sbjct: 821 LYKAQVRPRVEYCSHLWAGAPKYQLLPFD 849


>UniRef50_UPI0000E46F13 Cluster: PREDICTED: similar to CG33141-PB;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to CG33141-PB - Strongylocentrotus purpuratus
          Length = 1010

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 1   HPSNRNALLLHGRNRQGGGTYPCGLTRGPTTNKEVLPPV 117
           +P++     + GRN QG G Y  G+    TT K   PPV
Sbjct: 738 NPNSEYEFTVRGRNAQGDGPYYLGIVSAKTTIKPTEPPV 776


>UniRef50_Q73NR6 Cluster: Putative uncharacterized protein; n=1;
           Treponema denticola|Rep: Putative uncharacterized
           protein - Treponema denticola
          Length = 288

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 245 QDEEVFCYNIFSRF*PLNGSSANLQKCFLNLIVSTLRY 358
           Q EE+FC NI  RF  L GS  N Q+    + V  ++Y
Sbjct: 176 QMEEIFCQNIKERFTELLGSEINEQRIMQEVAVMLVKY 213


>UniRef50_Q22BB9 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 964

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 20/50 (40%), Positives = 31/50 (62%)
 Frame = +3

Query: 477 CILPWVLGYLGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQFSLQSTS 626
           CI+  VL  LGSILS  FS + S+++I N   KR  + N++ + +L  T+
Sbjct: 800 CIILLVLHLLGSILSNLFSSN-SNQIIQNGFMKRKHLQNQSIKNNLNVTN 848


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 727,256,528
Number of Sequences: 1657284
Number of extensions: 14492999
Number of successful extensions: 31920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31914
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)