Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0395
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   1.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.3  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   9.7  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 271 IITKNFFVLKFQLKTSNC*C*YRMKRTF-NSKDKCRVLSEISSRSINGTF 125
           II K F  ++ QLK S C     ++  F +++ K R  S+ +S  +N  F
Sbjct: 200 IIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYF 249


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 346 HPSICKLILIMSLARCRYLSN 408
           HPS+    L M  A+C  LSN
Sbjct: 29  HPSLRGTPLAMLAAQCNKLSN 49


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
          transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 83 PLVSPHG*VPPP 48
          P V PH  VPPP
Sbjct: 12 PTVLPHQEVPPP 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,846
Number of Sequences: 336
Number of extensions: 3823
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)