Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0395
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   1.5  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.4  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    25   7.9  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   7.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.9  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 271 YFLQILTFKWLFCKLAKVLLKPNSLHPSICKLILIMSLARCRYLSNILC 417
           Y L+ L+ +  FCKLAK+LL+   L  +  +  L+ S  +   L  I C
Sbjct: 490 YLLENLSDRLYFCKLAKLLLRKYPLDIAEHQFALVYSRFQRIPLKQISC 538


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +3

Query: 552 VISNKHSKR--PGVLNRAKQFSLQSTSWPSDAALF--PPLD 662
           ++S K+  R  P +L  A  +S+  T WPSD+  F  PPLD
Sbjct: 257 LLSYKNGSRNVPSIL-LAALYSVALTYWPSDSRSFGAPPLD 296


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 332 LRSTFASLQKSHLKVKIWRKYYNKKLLRLEVSIKNIELLMLIPN 201
           L S + S QKSHL V   +  Y   + R ++   N  LL  +P+
Sbjct: 585 LESIYDSFQKSHLSVIKAQSLYRGFITRTKIDYCNDYLLKRLPD 628


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 543 SSKVISNKHSKRPGVLNRAKQFSLQST 623
           S++++SN H  RP  +NRA+   ++ T
Sbjct: 246 SAQLVSNLHDMRPLDMNRAEDLIVKGT 272


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 480 ILPWVLGYLGSIL 518
           +LPWV GY GS+L
Sbjct: 501 LLPWVRGYSGSLL 513


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 263  KKLLRLEVSIKNIELLMLIPNET 195
            +KLLRLE+ IKN  + + I  ET
Sbjct: 2337 EKLLRLEIVIKNATIFISIFEET 2359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,027
Number of Sequences: 5004
Number of extensions: 61604
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)