Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0395
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0010 - 27024013-27024171,27024286-27024699,27025389-270254...    29   2.7  
04_03_0090 - 11037111-11037568,11039606-11039671,11040524-110407...    29   4.7  
02_04_0219 + 21007875-21008253,21009774-21009811,21009948-210099...    28   6.2  
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907...    28   8.2  
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053           28   8.2  

>05_07_0010 -
           27024013-27024171,27024286-27024699,27025389-27025445,
           27025544-27025637,27025775-27025868,27025949-27026117,
           27026450-27026554,27026665-27026784,27027190-27027735
          Length = 585

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -1

Query: 395 LHRANDIIKISLHIEGWRLLGLRSTFASLQKSHLKVKIWRKYYNKK-LLRLEVSIKNIEL 219
           L R  DI+ +   I GW LL     + + Q++  K  +   Y+N++ LL L V ++N+ L
Sbjct: 435 LRRGFDILDLDGGI-GWELLTSMVRYKARQRTGAKAALAHPYFNREGLLGLSV-MQNLRL 492

Query: 218 LMLIPNETD 192
            +L   + D
Sbjct: 493 QLLRATQKD 501


>04_03_0090 -
           11037111-11037568,11039606-11039671,11040524-11040724,
           11041049-11041157
          Length = 277

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 622 VLCKENCF-ALLRTPGRFECLFDITLELTSMLNAVDNIDPKYPNTHGRMQG*SQRR 458
           +L KEN +  +LRT G   CL  ++     M+ A   ++P   N   R  G  Q++
Sbjct: 113 LLAKENDYITILRTEGVNSCLIHLSEPNEKMVKATSAVEPASSNNAKRHGGSPQKK 168


>02_04_0219 +
           21007875-21008253,21009774-21009811,21009948-21009976,
           21010398-21010443,21010567-21010681,21010790-21010857,
           21011780-21011974,21012180-21012281,21012889-21013119,
           21013514-21013684
          Length = 457

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
 Frame = -2

Query: 688 KVTDPR--KP*SRGGNSAASEGQLVLCKENC------FALLRTPGRFECLFDITLELTSM 533
           KVTD +  K   + GN+AA+E + V+  E+C         ++   R + LFDI   LT M
Sbjct: 213 KVTDEKTIKHIEKAGNAAAAEERPVVTVEHCEEKDYSVVNVKCRDRSKLLFDIVCTLTDM 272

Query: 532 LNAVDNIDPKYPNTHGRMQG*SQRRNDVTI 443
              V +        +G  +   +R++  T+
Sbjct: 273 HYVVSHASVSSDGIYGIQELYIRRKDGRTL 302


>11_06_0395 +
           23088737-23088823,23090198-23090346,23090570-23090708,
           23090795-23090889,23090967-23091080,23091674-23091803,
           23091931-23092052,23092889-23093007,23093946-23094034,
           23094072-23094245,23094310-23094616,23094726-23095180,
           23095334-23096315,23096381-23097396,23097757-23097792,
           23098065-23098130
          Length = 1359

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 540 VSSKVISNKHSKRPGVLNRAKQFSLQSTSWPSDAALFPPL 659
           +   ++++  + RPG+  R K F +  TS P D   F  L
Sbjct: 267 IGGNIMAHASTTRPGLCKRTKYFLILMTSQPDDETGFSVL 306


>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
          Length = 1613

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 484 FRGYWDTWGRYCQQHLASTSALR*YQISIQNARESSTERSSFLYKAQVGPLML 642
           FRG  + W  + Q  +  T +LR   I I + +E S+        A+  PL +
Sbjct: 741 FRGVEENWNAFLQSLVKLTGSLRSLSIHILDEKEHSSSLEYLALIAESPPLFI 793


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,931,925
Number of Sequences: 37544
Number of extensions: 409166
Number of successful extensions: 875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)