Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0395
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29609| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_52988| Best HMM Match : RVT_1 (HMM E-Value=2.5)                     32   0.39 
SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18)                 31   0.68 
SB_35551| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4)                       31   0.90 
SB_16546| Best HMM Match : SH2 (HMM E-Value=6.4)                       31   0.90 
SB_9316| Best HMM Match : SH2 (HMM E-Value=6.4)                        31   0.90 
SB_7414| Best HMM Match : SH2 (HMM E-Value=6.4)                        31   0.90 
SB_48446| Best HMM Match : Pkinase (HMM E-Value=1.2e-05)               31   0.90 
SB_47851| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_47163| Best HMM Match : SH2 (HMM E-Value=6.4)                       31   0.90 
SB_24694| Best HMM Match : RVT_1 (HMM E-Value=0.99)                    31   0.90 
SB_6463| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)                  31   0.90 
SB_43796| Best HMM Match : SH2 (HMM E-Value=6.4)                       31   1.2  
SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)                   29   3.6  
SB_11072| Best HMM Match : SH2 (HMM E-Value=6.4)                       29   3.6  
SB_46049| Best HMM Match : SH2 (HMM E-Value=6.4)                       29   3.6  
SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_9149| Best HMM Match : Lipase_GDSL (HMM E-Value=0.51)               28   6.3  

>SB_29609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK+SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 35  LGIRLDNSLTWDNHLKYIHNKNSKRLGLLKRKKKFLSLKARTLFYHSLIQPILDYG 90


>SB_52988| Best HMM Match : RVT_1 (HMM E-Value=2.5)
          Length = 277

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    A + P LD G
Sbjct: 180 LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHALIQPILDYG 235


>SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18)
          Length = 552

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 382 LGIRLDNSLTWDNDLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 437


>SB_35551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 177 LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 232


>SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 252

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 82  LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 137


>SB_16546| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 124

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 45  LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 100


>SB_9316| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 169

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 45  LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 100


>SB_7414| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 323

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 159 LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 214


>SB_48446| Best HMM Match : Pkinase (HMM E-Value=1.2e-05)
          Length = 228

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 149 LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 204


>SB_47851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 893

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 796 LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 851


>SB_47163| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 172

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 45  LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 100


>SB_24694| Best HMM Match : RVT_1 (HMM E-Value=0.99)
          Length = 309

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 180 LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 235


>SB_6463| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
          Length = 675

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 578 LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 633


>SB_43796| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 352

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L    + D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 267 LGIRLDNTLTWDNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 322


>SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)
          Length = 270

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF 608
           LG  L  + + D   K I NK SKR G+L R K+F
Sbjct: 193 LGIRLDNSLTWDNHLKYIHNKISKRLGLLKRTKKF 227


>SB_11072| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 228

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + +   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 133 LGIRLDNSLTWNNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 188


>SB_46049| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 252

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 504 LGSILSTAFSIDVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           LG  L  + + +   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 45  LGIRLDNSLTWNNHLKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 100


>SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 377 IIKISLHIEGWRLLGLRSTFASLQKSHLKVKIWR 276
           IIK S +   WR LGL S   +L +  L V +W+
Sbjct: 206 IIKNSNYEILWRALGLSSRSPTLMRGSLTVSVWK 239


>SB_9149| Best HMM Match : Lipase_GDSL (HMM E-Value=0.51)
          Length = 604

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 537 DVSSKVISNKHSKRPGVLNRAKQF-SLQSTSWPSDAALFPPLD*G 668
           D   K I NK SKR G+L R K+F SL++ +    + + P LD G
Sbjct: 420 DNHPKYIHNKISKRLGLLKRTKKFLSLKARTLFYHSLIQPILDYG 464


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,652,229
Number of Sequences: 59808
Number of extensions: 460011
Number of successful extensions: 1035
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)