Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0395
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidas...    28   5.6  
AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF025451-12|ABA54427.1|  161|Caenorhabditis elegans Hypothetical...    28   5.6  

>Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical
           protein R07B5.6 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +1

Query: 283 ILTFKWLFCKLAKVLLKPNSLHPSICKLILIMSLARCRYLSNILCSTIVTAT**S*RHSV 462
           IL    L C +  ++L     HP IC  I+I+SL    +L  + C++ +       R   
Sbjct: 119 ILILPLLLCLIRLIILIYPKDHPMICSKIMIISLP-LLFLIPLCCTSFMIPALGYCRQMG 177

Query: 463 AVINPAS----FRGYWDTW 507
           + +N  +    + G WD W
Sbjct: 178 SPLNYGATYIYYSGGWDGW 196


>Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical
           protein T05A1.3 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 523 QHLASTSALR*YQISIQNARESSTERSSFLYKAQVG--PLMLHCSHLWTRVSGDQLLS 690
           +HL +   L     S++  + SS   S F  K  +   PL+ HC+H W   S  + +S
Sbjct: 282 EHLTNLILLDLKNNSLKEVKSSSFAGSKFQVKLFLSENPLLCHCNHKWLMDSSAKNIS 339


>AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 307 CKLAKVLLKPNSLHPSICKLILIMSLARCRYLSNIL 414
           C + +++ KP  L  +IC L  I+  A C Y  +I+
Sbjct: 2   CNIFQIVWKPMLLRRTICILACIVQFATCGYQRSIV 37


>AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical
           protein Y70D2A.2 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 307 CKLAKVLLKPNSLHPSICKLILIMSLARCRYLSNIL 414
           C + +++ KP  L  +IC L  I+  A C Y  +I+
Sbjct: 2   CNIFQIVWKPMLLRRTICILACIVQFATCGYQRSIV 37


>AF025451-12|ABA54427.1|  161|Caenorhabditis elegans Hypothetical
           protein C24H12.12 protein.
          Length = 161

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +1

Query: 583 ESSTERSSFLYKAQVGPLMLHCSHLWTRV 669
           ++ T+ + ++ K + GP++ HC+ +W  +
Sbjct: 43  KAGTQCTEYVLKLEGGPVLPHCAEMWVNI 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,750,859
Number of Sequences: 27780
Number of extensions: 349037
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)