Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0395
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15660.1 68414.m01880 expressed protein similar to CENPCA pro...    31   0.97 
At3g01240.1 68416.m00030 expressed protein                             30   1.7  
At3g08650.2 68416.m01005 metal transporter family protein contai...    29   3.9  
At3g08650.1 68416.m01004 metal transporter family protein contai...    29   3.9  
At1g22490.1 68414.m02810 basic helix-loop-helix (bHLH) family pr...    29   3.9  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    28   5.2  
At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00...    27   9.0  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    27   9.0  

>At1g15660.1 68414.m01880 expressed protein similar to CENPCA
           protein (GI:11863170) {Zea mays}
          Length = 705

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 534 IDVSSKVISNKHSKRPGVLNRAKQFSLQ-STSWPSDAA 644
           +DV    I NK  +RPG+  + K FSL  +TS P   A
Sbjct: 77  VDVQLNPIPNKRERRPGLDRKRKSFSLHLTTSQPPPVA 114


>At3g01240.1 68416.m00030 expressed protein
          Length = 130

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -1

Query: 407 FDRYLHRANDIIKISLHIEGWRLLGLRSTFASLQKSHLKVKIWRKYYNKKL-LR-LEVSI 234
           F++ LH+A  +I   L  +   + GL+S   +L KS + +K     Y K + LR  E  +
Sbjct: 32  FEKDLHKAEAMIAEELKAKKTNIQGLKSEVKTLSKSEVMLKELGNAYKKDMDLRPYEKKL 91

Query: 233 KNIELLMLI 207
           KN   ++ +
Sbjct: 92  KNFSRIVAL 100


>At3g08650.2 68416.m01005 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 619

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 62  TRADSQ-EVLPPIKRSYHQ*VPKSTVNGSGGNFAQHPTFIFGIKGPFHSVSASTVRCF*L 238
           T A++Q EV   ++ S H+ + ++ ++GSG     H   +   +G  + VS STV  F L
Sbjct: 48  TDANAQWEVSHKVRASPHENMGRNVIDGSGVEKTLHDIGMGEKRGTHNKVSVSTVALFTL 107

Query: 239 KL 244
            +
Sbjct: 108 AM 109


>At3g08650.1 68416.m01004 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 595

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 62  TRADSQ-EVLPPIKRSYHQ*VPKSTVNGSGGNFAQHPTFIFGIKGPFHSVSASTVRCF*L 238
           T A++Q EV   ++ S H+ + ++ ++GSG     H   +   +G  + VS STV  F L
Sbjct: 24  TDANAQWEVSHKVRASPHENMGRNVIDGSGVEKTLHDIGMGEKRGTHNKVSVSTVALFTL 83

Query: 239 KL 244
            +
Sbjct: 84  AM 85


>At1g22490.1 68414.m02810 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -1

Query: 314 SLQKSHLKVKIWRKYYNKKLLRLEVSIKNIELLMLIPNETDL 189
           ++ +SH  +KI  K   ++LL+L  S++++ L +L  N T L
Sbjct: 224 TVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVTTL 265


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1234

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -1

Query: 398 YLHRANDIIKISLHIEGWR-LLGLRSTFASLQKSHLKVKIWRKYYNKKLLRL--EVSIKN 228
           +L    DI  +  +  G R +LG+      +++ HL+V  ++K  N + L+L    +I  
Sbjct: 512 FLVDGKDIADVLDNCSGTRKVLGISLDMDEIEELHLQVDAFKKMLNLRFLKLYTNTNISE 571

Query: 227 IELLMLIPNE 198
            E  +L+P E
Sbjct: 572 KEDKLLLPKE 581


>At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 566

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 16  NALLLHGRNRQGGGTYPCGLTRGPTTNKEVL 108
           N   LHGR+++G   YP G   G   N +VL
Sbjct: 150 NGFFLHGRDKEGSCLYP-GFVMGIEKNCDVL 179


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 205 GISINSSMFLIETSRRRSFLL*YFLQILTF 294
           G+S+N SM+ IE   +++F+L +     TF
Sbjct: 197 GVSVNGSMYWIELQEKKNFILSFDFSKETF 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,798,185
Number of Sequences: 28952
Number of extensions: 323591
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)