Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0394
         (429 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8A424 Cluster: Putative uncharacterized protein; n=1; ...    35   0.62 
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    33   1.9  

>UniRef50_Q8A424 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides thetaiotaomicron|Rep: Putative
           uncharacterized protein - Bacteroides thetaiotaomicron
          Length = 395

 Score = 35.1 bits (77), Expect = 0.62
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = -2

Query: 392 PRESITIIALCGEYMIANNRLSVQSMKYFDVL*KYTTREEGYLKLSLIRYNYILTAGRRP 213
           P E + + AL G  +IA  RLS +++    V+      E G +  +LI  +Y++ A    
Sbjct: 117 PGEILVLYALLGYVLIAVCRLSTRTVTIIAVILLLQPIELGQIIYALINPDYVINADLDA 176

Query: 212 YYVVLGINARQTRHFIEQCSRA 147
            Y  L   A++   F+E C  A
Sbjct: 177 PYWELVNTAQKEGSFLEMCKTA 198


>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +1

Query: 388 RGGARYPIRPIVSR 429
           RGGARYPIRPIVSR
Sbjct: 260 RGGARYPIRPIVSR 273


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 392,395,003
Number of Sequences: 1657284
Number of extensions: 7008975
Number of successful extensions: 13926
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13924
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)