Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0394
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   2.2  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    25   3.8  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   5.0  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   6.6  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    25   6.6  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   6.6  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    24   8.7  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 260  LSLIRYNYILTAGRRPYYVVLGINARQ 180
            LSLIR+  ILT+G   Y+V  G+ + Q
Sbjct: 1480 LSLIRFG-ILTSGEVDYHVARGVRSEQ 1505


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 170 FIEQCSRAHVYYNNTRFAEKRPEH 99
           F  +  R  +Y N+TR  E RP H
Sbjct: 180 FFNEVYRHFLYINSTRIYEDRPSH 203


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 300 NVKILHTLNGESVICDHIFSA 362
           +V++LHTL   SVIC   FSA
Sbjct: 277 SVQLLHTLEHTSVICYVRFSA 297


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 304 SKYFIL*TESLLFAIIYSPHKAIM 375
           S++FIL TES+L+  I  P K ++
Sbjct: 401 SEFFILTTESVLWMDIQHPQKPLL 424


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 300 NVKILHTLNGESVICDHIFSA*SDNGYRLSRG 395
           N+ ++HTL   SV+C   F   S+NG  L+ G
Sbjct: 303 NINLVHTLEHPSVVCCVKF---SNNGKYLATG 331


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 429 TTHYRANWVPGPPSRVDNHYRFMRRIY 349
           +T+  AN   G  S   +HYRF ++IY
Sbjct: 247 STNAMANIAVGAGSENMDHYRFAKKIY 273


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 273 FFSGGIF-LKNVKILHTLNGES 335
           FFS G F L N  + H+LNG+S
Sbjct: 110 FFSEGSFNLPNSNMSHSLNGDS 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,439
Number of Sequences: 5004
Number of extensions: 30802
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)