Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0394
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_7903| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)         27   8.7  
SB_34819| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_7364| Best HMM Match : Cadherin (HMM E-Value=0)                     27   8.7  

>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 278 EEGYLKLSLIRYNYILTAGRRPY 210
           ++G+LK S + Y+  L  G+RPY
Sbjct: 191 DKGFLKKSSLTYHLTLHTGKRPY 213


>SB_7903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -3

Query: 226 RAGVLIMLC*ELMLDRQGIL*NNVHVHTCTITTRDLRKNDQNINQTTQF--ETLYQNLIS 53
           R  V+ +LC +L     GIL  + H HT T   +D+    Q   Q  ++  + L +  I 
Sbjct: 6   RTLVVWLLCLQLTSLTVGILVTSTHEHTMTERIQDISSVVQPDIQMEEYNLDDLGERNIE 65

Query: 52  TRKLY 38
           T+KL+
Sbjct: 66  TKKLF 70


>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
          Length = 192

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -2

Query: 326 VQSMKYFDVL*KYTTREEGYLKLSLIRYNYILTAGRRPYYVVLGINARQTRHFIEQCSRA 147
           +Q+M+  D   +Y    +   ++      + L  G  PYY  +G +   T  F+EQ +RA
Sbjct: 121 IQNMRIIDGKPEYKGTMDVLARIVRNEGVFALWKGFTPYYFRIGPHTVLTFIFLEQLNRA 180

Query: 146 HVYY 135
             Y+
Sbjct: 181 ANYF 184


>SB_34819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 104 LVVFPQIACCYSTRVH 151
           L VFPQI+CC+ ++ H
Sbjct: 150 LWVFPQISCCWRSKKH 165


>SB_7364| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 408

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 154 HVHTCTITTR--DLRKNDQNINQTTQFETLYQ 65
           H+ TC IT R  D+  N    NQTT   +L++
Sbjct: 377 HIATCNITVRITDVNDNSPVFNQTTMNISLHE 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,471,044
Number of Sequences: 59808
Number of extensions: 235454
Number of successful extensions: 435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)