Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0394
         (429 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089468-1|AAL90206.1|  462|Drosophila melanogaster AT27896p pro...    29   2.0  
AE014296-1121|AAF50659.1|  462|Drosophila melanogaster CG32396-P...    29   2.0  
AF467953-1|AAL76078.1|  426|Drosophila melanogaster histamine-ga...    29   3.5  

>AY089468-1|AAL90206.1|  462|Drosophila melanogaster AT27896p
           protein.
          Length = 462

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 163 NNVHVHTCTITTRDLRKNDQNINQTTQFETLYQNLI 56
           NN+    C I  R L+ +   I  TT  +TL+Q L+
Sbjct: 346 NNIKTAICDIPPRGLKMSATFIGNTTAIQTLFQRLL 381


>AE014296-1121|AAF50659.1|  462|Drosophila melanogaster CG32396-PA
           protein.
          Length = 462

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 163 NNVHVHTCTITTRDLRKNDQNINQTTQFETLYQNLI 56
           NN+    C I  R L+ +   I  TT  +TL+Q L+
Sbjct: 346 NNIKTAICDIPPRGLKMSATFIGNTTAIQTLFQRLL 381


>AF467953-1|AAL76078.1|  426|Drosophila melanogaster histamine-gated
           chloride channelsubunit protein.
          Length = 426

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 206 VVLGINARQTRHFIEQCSRAHVYYNNTRFAEKRPEHQSNYTI*NAISEPN 57
           + L I  R     I+ C   H Y NNT  AE    ++S+ ++ + +  P+
Sbjct: 15  IALAIYLRALEQSIQHCHCVHGYRNNTESAELVSHYESSLSLPDILPIPS 64


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,812
Number of Sequences: 53049
Number of extensions: 330308
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1334434944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)