Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0393
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    29   0.42 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   3.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   3.0  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   5.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.9  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 108 VVAVTRVDLLRSC-QSYNEDGEQNEQFREHFEQFSK 4
           ++ V R +L+R C   +NE  E  E F+  ++ FSK
Sbjct: 383 IMKVIRKNLVRRCLDMFNEIAEDKENFKTFYDAFSK 418


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 92  LVTATTITDIRIQATSVIPDTVPWPMDRTVAMLPL 196
           +V  TTIT +     +++ +T+  PM+ T  +LP+
Sbjct: 120 MVETTTITPMVEAMITLMEETMTTPMEETTTILPM 154


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/76 (22%), Positives = 38/76 (50%)
 Frame = +2

Query: 242 KHLCY*FNKNILKNIMILLFISFEILINNFRGLLSIYKTPLFLSVFFSHVNYHFVNVCR* 421
           +++C    KN++ +++ +  IS EI       L + +K+   L VFF+ + +  + +   
Sbjct: 448 QYICLALAKNVVSHVLPVFEISCEIFWLILSELKNFFKSE--LEVFFTEIFFPILEM--- 502

Query: 422 DSRGTNHESVFLFDIF 469
               +N + + L +IF
Sbjct: 503 -RTSSNQQKIVLLNIF 517


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 284 IMILLFISFEILINNFRGLLSIYK 355
           ++ LL +  +I   NFRG LSIY+
Sbjct: 328 VVALLLMQHKISNGNFRGALSIYQ 351


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 3    TLKTAQNVRETVHSVRR--PRCSSGKT 77
            T+   Q +R+ +H++R+  PR SS KT
Sbjct: 1161 TITAEQEMRDLLHNIRQPLPRSSSSKT 1187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,329
Number of Sequences: 5004
Number of extensions: 32594
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)