Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0393
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       29   2.3  
SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_52236| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 108 VVAVTRVDLLRSCQS-YNEDGEQNEQFREHFEQFSK 4
           ++ V R +L++ C   +NE  E  + +++ +EQF K
Sbjct: 339 ILKVIRKNLVKKCMELFNEIAEDQDNYKKFYEQFGK 374


>SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +3

Query: 6   LKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQL-RIYVSRLRRLSRIQSPGLWIVRW 182
           L     + ETV  VR+      +      W  L +L     +R R  SR +  G W+V W
Sbjct: 170 LNGESGLNETVFKVRKVLSKHKEAMNASPWRSLPELTNAGGARCRDSSRPRR-GPWLVCW 228

Query: 183 LCCLS 197
            CC++
Sbjct: 229 TCCMT 233


>SB_52236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 141 LSRIQSPGLWIVRWLCCLSIQP 206
           LS +  PGL ++R LC LS QP
Sbjct: 18  LSNVFLPGLTLIRSLCTLSNQP 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,312,127
Number of Sequences: 59808
Number of extensions: 222490
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)