Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0392
         (746 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    45   0.002
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.049
UniRef50_UPI0000ECA406 Cluster: UPI0000ECA406 related cluster; n...    34   3.2  
UniRef50_UPI0000E80D60 Cluster: PREDICTED: hypothetical protein;...    34   4.3  
UniRef50_UPI0000E46F13 Cluster: PREDICTED: similar to CG33141-PB...    33   5.6  
UniRef50_A2BV97 Cluster: Putative uncharacterized protein; n=1; ...    33   7.5  
UniRef50_Q0IGS7 Cluster: RT01106p; n=2; Sophophora|Rep: RT01106p...    33   7.5  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=25; Arthropoda|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 986

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 24/46 (52%), Positives = 30/46 (65%)
 Frame = +2

Query: 548 LTLHPSVGIGILGVDIVNSI*HRRQL*GNIK*AFKTPGVLNRAKQF 685
           ++L PS  IGILGVDI + +  R  L G  K A K  GVLNRAK++
Sbjct: 767 VSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRY 812


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 40.3 bits (90), Expect = 0.049
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 123 AGWWYLPVRTHKRSYHQ 173
           A WWYLP RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_UPI0000ECA406 Cluster: UPI0000ECA406 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECA406 UniRef100 entry -
           Gallus gallus
          Length = 167

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 197 VPKSTVN-GSGGNFAQHPTFIFG-IKGPFHSVSASTVRCF 310
           VP S V+ G G   AQ P  +F  +  PFHS+  S  RCF
Sbjct: 35  VPSSGVSCGQGAVPAQRPLVLFSRVAAPFHSIQGSVSRCF 74


>UniRef50_UPI0000E80D60 Cluster: PREDICTED: hypothetical protein;
           n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
           - Gallus gallus
          Length = 121

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 23/51 (45%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 19  RGGGRSXLVXP-PGCRXFGTRHPS-NRNALLLHGRNRQGGGTYPCGLTRGP 165
           RGGGR       PG R  G  HP     AL L    R+GGG Y  G  RGP
Sbjct: 47  RGGGRGGAARAAPGSR--GQAHPRLESRALPLTAALRRGGGRYRSGRCRGP 95


>UniRef50_UPI0000E46F13 Cluster: PREDICTED: similar to CG33141-PB;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to CG33141-PB - Strongylocentrotus purpuratus
          Length = 1010

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 79  HPSNRNALLLHGRNRQGGGTYPCGLTRGPTTNKEVLPPV 195
           +P++     + GRN QG G Y  G+    TT K   PPV
Sbjct: 738 NPNSEYEFTVRGRNAQGDGPYYLGIVSAKTTIKPTEPPV 776


>UniRef50_A2BV97 Cluster: Putative uncharacterized protein; n=1;
           Prochlorococcus marinus str. MIT 9515|Rep: Putative
           uncharacterized protein - Prochlorococcus marinus
           (strain MIT 9515)
          Length = 163

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = -1

Query: 410 LRSTFASLQESHLKVKIWRKYYNKKLLRLEVSIKNIELL 294
           L S+F +++ES +K        NKK+ +LE +I+NI+++
Sbjct: 29  LESSFKNVEESRIKEDAKNNLKNKKVFKLEENIENIQII 67


>UniRef50_Q0IGS7 Cluster: RT01106p; n=2; Sophophora|Rep: RT01106p -
           Drosophila melanogaster (Fruit fly)
          Length = 284

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 280 FGISINS-SMFLIETSRRRSFLL*YFLQILTFKWLSCKLAKVLLKPNSLHPSICKLILIM 456
           F I+ N  +  L++TS R+  L          +W SC+  + L+ P S H  +C + ++ 
Sbjct: 63  FNITSNMLACMLVDTSIRKELLKPPLDAAQLARWHSCQDCQTLVPPRSWHCEVCNVCVLK 122

Query: 457 SLARCRY 477
               CR+
Sbjct: 123 RDHHCRF 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,039,104
Number of Sequences: 1657284
Number of extensions: 15976861
Number of successful extensions: 33173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33157
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)