Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0392
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   2.0  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   4.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.9  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   7.9  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   7.9  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 349 IITKNFFVLKFQLKTSNC*C*YRMKRTF-NSKDKCRVLSEISSRSINGTF 203
           II K F  ++ QLK S C     ++  F +++ K R  S+ +S  +N  F
Sbjct: 200 IIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYF 249


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 27  RPLXTSGSPGLQXIRHEAPFKPKRITASRQ 116
           R L ++ S  L  IR+E+   P R+ + ++
Sbjct: 39  RELISNSSDALDKIRYESLTNPSRLDSGKE 68


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 424 HPSICKLILIMSLARCRYLSN 486
           HPS+    L M  A+C  LSN
Sbjct: 29  HPSLRGTPLAMLAAQCNKLSN 49


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 352 FLQILTFKWLSCKLAKVLLKPNSLHPSICKLI 447
           FLQIL    L+    KV LK   +  S+ KLI
Sbjct: 275 FLQILEILALAYLCDKVQLKIGEIKYSVNKLI 306


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 383 ESHLKVKIWRKYYNKKLLRLEVSIKNIE 300
           E+H      R  + KKLL +E+S  N E
Sbjct: 338 EAHYASNCLRVQFQKKLLLVELSWMNDE 365


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,386
Number of Sequences: 336
Number of extensions: 4102
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)