Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0392
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   3.8  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   8.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.7  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   8.7  

>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 673  SVEDSRRFECLFDITLELTSMLNAVDNIDPKY 578
            ++ED+ + +CLF +T+E T+ + +  N D +Y
Sbjct: 1383 AIEDAEKMQCLFLLTVEATNSIIS-PNADYEY 1413


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 558 ILPWVLGYLGSIL 596
           +LPWV GY GS+L
Sbjct: 501 LLPWVRGYSGSLL 513


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 341  KKLLRLEVSIKNIELLMLIPNET 273
            +KLLRLE+ IKN  + + I  ET
Sbjct: 2337 EKLLRLEIVIKNATIFISIFEET 2359


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 656 PGVLNRAKQFSLQSTSWPSDAALF--PPLD 739
           P +L  A  +S+  T WPSD+  F  PPLD
Sbjct: 268 PSIL-LAALYSVALTYWPSDSRSFGAPPLD 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,652
Number of Sequences: 5004
Number of extensions: 64524
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)