Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0392
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0305 - 23970692-23970825,23972323-23973703                       31   0.97 
05_07_0010 - 27024013-27024171,27024286-27024699,27025389-270254...    29   5.2  
06_03_0869 + 25548853-25549074,25549191-25549251,25549912-255500...    28   9.1  

>05_05_0305 - 23970692-23970825,23972323-23973703
          Length = 504

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 88  LKGASCRIXCSPGXPLV*SGRHRGEXP 8
           L+G  C+  C PG P    G+H GE P
Sbjct: 437 LQGCGCQSVCLPGDPNCACGQHNGELP 463


>05_07_0010 -
           27024013-27024171,27024286-27024699,27025389-27025445,
           27025544-27025637,27025775-27025868,27025949-27026117,
           27026450-27026554,27026665-27026784,27027190-27027735
          Length = 585

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -1

Query: 473 LHRANDIIKISLHIEGWRLLGLRSTFASLQESHLKVKIWRKYYNKK-LLRLEVSIKNIEL 297
           L R  DI+ +   I GW LL     + + Q +  K  +   Y+N++ LL L V ++N+ L
Sbjct: 435 LRRGFDILDLDGGI-GWELLTSMVRYKARQRTGAKAALAHPYFNREGLLGLSV-MQNLRL 492

Query: 296 LMLIPNETD 270
            +L   + D
Sbjct: 493 QLLRATQKD 501


>06_03_0869 +
           25548853-25549074,25549191-25549251,25549912-25550006,
           25550094-25550127,25550551-25550605,25550687-25550729,
           25551064-25551135
          Length = 193

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +2

Query: 8   WXLPAVAAALX*WX-PRAAGNSARGTLQTETHYCFTAEIGRVVVPTRADSQEVLPPIKRS 184
           W  P V++A   +  PR    +  G ++ E      +     + P  A    V+PP +R 
Sbjct: 8   WAPPIVSSASAVFARPRRGARAGAGAVRCELAASAPSSAAGSLAPRWAQRTVVIPPQRRG 67

Query: 185 YHQ*VPKSTVNG 220
            H   PK  VNG
Sbjct: 68  CHLITPK-IVNG 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,789,547
Number of Sequences: 37544
Number of extensions: 469439
Number of successful extensions: 892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)