Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0392
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4431| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_4523| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_18140| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_25764| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_4431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 49  PPGCRXFGTRHPSNRNALLLHGRNRQGGGT 138
           PPG    G RHP  R   L+   N Q  GT
Sbjct: 98  PPGLESAGIRHPKQRGVRLITNENTQDCGT 127


>SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 80  CLVPNXLQPGGXTSXERPPPR 18
           CL+ N   PG     ERPPPR
Sbjct: 69  CLISNSCSPGDPLVLERPPPR 89


>SB_4523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -1

Query: 161 PLVSP-HG*VPPPC---LFLP*SSNAFRFEGC-LVPNXLQPGGXTSXERPPPR 18
           P+  P H  +P  C   +F+P ++ +FR      + N   PG     ERPPPR
Sbjct: 11  PIFRPLHYGIPRRCHVRVFMPATATSFRTSNKPTISNSCSPGDPLVLERPPPR 63


>SB_18140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 19  RGGGRSXLVXPPGCRXFGTRH--PSNRNALLLHGRNRQGGGT 138
           RGGGRS     PG + F  +H   +    +  H R +   GT
Sbjct: 7   RGGGRSRTSGSPGLQEFDVKHHQGTRDRTITYHSRGKHNQGT 48


>SB_25764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 89 FEGCLVPNXLQPGGXTSXERPPPR 18
          F  C   N   PG     ERPPPR
Sbjct: 6  FASCFASNSCSPGDPLVLERPPPR 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,132,125
Number of Sequences: 59808
Number of extensions: 511224
Number of successful extensions: 2761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2684
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)