Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0392
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47070-1|CAA87340.1|  516|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    29   4.6  
AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidas...    28   6.1  
AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical ...    28   6.1  

>Z47070-1|CAA87340.1|  516|Caenorhabditis elegans Hypothetical
           protein T09B9.2 protein.
          Length = 516

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 702 LVLCKENCFALLRTPGVLNAYLIL 631
           ++LC  N FA L TPGVL A + L
Sbjct: 381 IILCLANAFAGLHTPGVLTAIVQL 404


>U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical
           protein T25D1.1 protein.
          Length = 612

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 735 RGGNSAASEG---QLVLCKENCFALLRTPGVL 649
           +G N +   G   Q+ L KENC  L+R PGVL
Sbjct: 466 KGANKSEEAGKWMQMELKKENCGELVRLPGVL 497


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 735 RGGNSAASEG---QLVLCKENCFALLRTPGVL 649
           +G N +   G   Q+ L KENC  L+R PGVL
Sbjct: 612 KGANKSEEAGKWMQMELKKENCGELVRLPGVL 643


>AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 385 CKLAKVLLKPNSLHPSICKLILIMSLARCRYLSNIL 492
           C + +++ KP  L  +IC L  I+  A C Y  +I+
Sbjct: 2   CNIFQIVWKPMLLRRTICILACIVQFATCGYQRSIV 37


>AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical
           protein Y70D2A.2 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 385 CKLAKVLLKPNSLHPSICKLILIMSLARCRYLSNIL 492
           C + +++ KP  L  +IC L  I+  A C Y  +I+
Sbjct: 2   CNIFQIVWKPMLLRRTICILACIVQFATCGYQRSIV 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,728,508
Number of Sequences: 27780
Number of extensions: 381441
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)