Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0392
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22490.1 68414.m02810 basic helix-loop-helix (bHLH) family pr...    30   1.4  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    30   1.9  
At3g08650.2 68416.m01005 metal transporter family protein contai...    29   4.3  
At3g08650.1 68416.m01004 metal transporter family protein contai...    29   4.3  
At3g01240.1 68416.m00030 expressed protein                             28   5.7  
At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00...    27   10.0 
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    27   10.0 

>At1g22490.1 68414.m02810 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 392 SLQESHLKVKIWRKYYNKKLLRLEVSIKNIELLMLIPNETDL 267
           ++ ESH  +KI  K   ++LL+L  S++++ L +L  N T L
Sbjct: 224 TVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVTTL 265


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1234

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -1

Query: 476 YLHRANDIIKISLHIEGWR-LLGLRSTFASLQESHLKVKIWRKYYNKKLLRL--EVSIKN 306
           +L    DI  +  +  G R +LG+      ++E HL+V  ++K  N + L+L    +I  
Sbjct: 512 FLVDGKDIADVLDNCSGTRKVLGISLDMDEIEELHLQVDAFKKMLNLRFLKLYTNTNISE 571

Query: 305 IELLMLIPNE 276
            E  +L+P E
Sbjct: 572 KEDKLLLPKE 581


>At3g08650.2 68416.m01005 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 619

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 140 TRADSQ-EVLPPIKRSYHQ*VPKSTVNGSGGNFAQHPTFIFGIKGPFHSVSASTVRCF*L 316
           T A++Q EV   ++ S H+ + ++ ++GSG     H   +   +G  + VS STV  F L
Sbjct: 48  TDANAQWEVSHKVRASPHENMGRNVIDGSGVEKTLHDIGMGEKRGTHNKVSVSTVALFTL 107

Query: 317 KL 322
            +
Sbjct: 108 AM 109


>At3g08650.1 68416.m01004 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 595

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 140 TRADSQ-EVLPPIKRSYHQ*VPKSTVNGSGGNFAQHPTFIFGIKGPFHSVSASTVRCF*L 316
           T A++Q EV   ++ S H+ + ++ ++GSG     H   +   +G  + VS STV  F L
Sbjct: 24  TDANAQWEVSHKVRASPHENMGRNVIDGSGVEKTLHDIGMGEKRGTHNKVSVSTVALFTL 83

Query: 317 KL 322
            +
Sbjct: 84  AM 85


>At3g01240.1 68416.m00030 expressed protein
          Length = 130

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -1

Query: 485 FDRYLHRANDIIKISLHIEGWRLLGLRSTFASLQESHLKVKIWRKYYNKKL-LR-LEVSI 312
           F++ LH+A  +I   L  +   + GL+S   +L +S + +K     Y K + LR  E  +
Sbjct: 32  FEKDLHKAEAMIAEELKAKKTNIQGLKSEVKTLSKSEVMLKELGNAYKKDMDLRPYEKKL 91

Query: 311 KNIELLMLI 285
           KN   ++ +
Sbjct: 92  KNFSRIVAL 100


>At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 566

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 94  NALLLHGRNRQGGGTYPCGLTRGPTTNKEVL 186
           N   LHGR+++G   YP G   G   N +VL
Sbjct: 150 NGFFLHGRDKEGSCLYP-GFVMGIEKNCDVL 179


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 283 GISINSSMFLIETSRRRSFLL*YFLQILTF 372
           G+S+N SM+ IE   +++F+L +     TF
Sbjct: 197 GVSVNGSMYWIELQEKKNFILSFDFSKETF 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,728,737
Number of Sequences: 28952
Number of extensions: 352900
Number of successful extensions: 662
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)