Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0391
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 141 5e-35
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 54 1e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 53 3e-08
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 1.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.0
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 25 5.2
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 5.2
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 5.2
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 6.9
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 141 bits (342), Expect = 5e-35
Identities = 61/115 (53%), Positives = 85/115 (73%)
Frame = -1
Query: 468 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 289
+P ++ G N V L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG
Sbjct: 128 KPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
Query: 288 ALVHRKTCTCLALTNVEFGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 124
++H+KT LA+T V D+ + +V A+ NF+ +Y+E R+ WGGG++G K+
Sbjct: 188 TVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKT 242
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 54.0 bits (124), Expect = 1e-08
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = -1
Query: 456 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 289
+R G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 52.8 bits (121), Expect = 3e-08
Identities = 33/100 (33%), Positives = 47/100 (47%)
Frame = -1
Query: 456 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 277
I G V K V K + LV++A D+ P++++ +P LC VPY K LG +
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113
Query: 276 RKTCTCLALTNVEFGDRASFSKVVEAIKTNFNERYEELRK 157
K T + V G + SKV E + E YEE+ K
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 303 KSRL-GALVHRKTCTCLALTNVEFGDRASFSK 211
KSR G L +R CTC A+ + F A FSK
Sbjct: 131 KSRQSGTLNNRTLCTCTAIAGIVFTISAVFSK 162
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 435 LCLCRIGWC 461
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 351 PALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVEFGDRAS 220
P RKMG+P + S L + C L EF +RA+
Sbjct: 167 PESKRKMGLPVIFTRNWSDENLLPNENNCPRLVQLYEEFAERAA 210
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 215 EKEARSPNSTF-VRAKHVHVLRCTS 286
+K+ +S N+T VRAKH+ +L T+
Sbjct: 528 QKQLKSANNTLHVRAKHIQILENTN 552
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 453 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 331
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 322 ILHCQGQVPPRCTCTPQDMHMLSSNKC 242
+LHC + RC C P+++ + S++ C
Sbjct: 333 LLHCPRK--GRCFCKPEEIDLSSNSSC 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,840
Number of Sequences: 5004
Number of extensions: 29400
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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