Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0391
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       166   9e-42
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             166   9e-42
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        57   1e-08
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          45   3e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               35   0.047
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         30   1.3  
SB_45488| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)           28   5.4  
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)                    27   7.2  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   27   7.2  
SB_31195| Best HMM Match : PspA_IM30 (HMM E-Value=1)                   27   7.2  
SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2)                     27   7.2  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          27   7.2  
SB_49517| Best HMM Match : Hydrolase (HMM E-Value=2.7e-27)             27   9.5  

>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  166 bits (404), Expect = 9e-42
 Identities = 71/115 (61%), Positives = 94/115 (81%)
 Frame = -1

Query: 468 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 289
           +P  ++ G N +T LVE KKAQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG
Sbjct: 41  KPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLG 100

Query: 288 ALVHRKTCTCLALTNVEFGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 124
            +VH+K  T L +T V   D+ S + ++E++KTN+NER++E+RKHWGGG++G KS
Sbjct: 101 KVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFDEIRKHWGGGIMGPKS 155


>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  166 bits (404), Expect = 9e-42
 Identities = 71/115 (61%), Positives = 94/115 (81%)
 Frame = -1

Query: 468 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 289
           +P  ++ G N +T LVE KKAQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG
Sbjct: 132 KPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLG 191

Query: 288 ALVHRKTCTCLALTNVEFGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 124
            +VH+K  T L +T V   D+ S + ++E++KTN+NER++E+RKHWGGG++G KS
Sbjct: 192 KVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFDEIRKHWGGGIMGPKS 246


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = -1

Query: 456 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 283
           +R G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY  V+ K+ LG    
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATG 153

Query: 282 VHRKTCTCLALTN 244
           V R    C    N
Sbjct: 154 VTRPVIACAVTVN 166


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -1

Query: 468 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 301
           +  T+R G   V K + K +   V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -1

Query: 447 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 289
           G +   K ++K++A L +++++ D    V  + ALC + G+P   V    +LG
Sbjct: 41  GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93


>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = -1

Query: 348  ALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVEFGDRASFSKVVEAIKTNFNERYE 169
            A C++    + +++GK +  AL+ +KT   L +  V    R S + VV+   ++ +E+Y 
Sbjct: 1206 ASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYS 1263

Query: 168  EL 163
            ++
Sbjct: 1264 DI 1265


>SB_45488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 310 DNAVWYPHFTA*RWQEENQLNGINIMSDDHKLRLLFLDQLG 432
           D+A+ YPH     W+ +  +N I ++    K   LF+D+LG
Sbjct: 358 DSALCYPHSLT--WRRDVTVNLILVLKHQTKFLKLFIDKLG 396


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 481 ASPKEAQHHPIRHKHSHQAGREKEGAACGHRS 386
           A  +  +H   +HKH H+ G+ K      HRS
Sbjct: 475 AKKESRKHKKHKHKHEHKEGQHKGSHRSSHRS 506


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -1

Query: 312  VKGKSRLGALVHRKTCTCLALTNVEFGDRASFSKVVEAIKTNFNERYEEL 163
            VKGK+ LG    +KT   L +  V    R S S VVEA  ++  E+Y ++
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137


>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
          Length = 437

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 251 RAKHVHVLRCTSAPRRDLPLT 313
           R +H H+ RCTSAP    P T
Sbjct: 74  RKRHFHLRRCTSAPEPSSPNT 94


>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 321 YCIVKGKSRLGALVHRKTCTCLALTNVEFGDRASFSKVVEAIKTNFNERYEEL 163
           + +++GK +  AL+ +KT   L +  V      S S VVEA  ++  E+Y ++
Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388


>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
          Length = 861

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 237 FGDRASFSKVVEAIKTNFNERYEELRKHWG 148
           FGD A + ++ + I   F  RY+   +H+G
Sbjct: 458 FGDFARYYRISQGIYGGFTRRYKVFTRHYG 487


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 231 DRASFSKVVEAIKTNFNERYEELRKHWGG 145
           DRAS+  + EA + +  ER EEL K W G
Sbjct: 635 DRASYYNMAEAAEVS--ERVEELVKQWRG 661


>SB_31195| Best HMM Match : PspA_IM30 (HMM E-Value=1)
          Length = 345

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 264 TCLALTNVEFGDRASFSKVVEAIKTNFNERYEELRKHW 151
           T LAL N+ + + AS  +  EA+     E  +  R HW
Sbjct: 148 TSLALRNIMYAEGASHVEASEALPVKNGEAEKSGRHHW 185


>SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2)
          Length = 759

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 264 TCLALTNVEFGDRASFSKVVEAIKTNFNERYEELRKHW 151
           T LAL N+ + + AS  +  EA+     E  +  R HW
Sbjct: 42  TSLALRNIMYAEGASHVEASEALPVKNGEAEKSGRHHW 79


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 368  SWFSSCQRYAVKWGYHTALSRASPASVHLYTARHAHA*L*QMWSL 234
            +WF       V+W YH  +  +S  S+++YT       L ++WS+
Sbjct: 2891 TWFKPSSTCRVRWFYH--MMGSSMGSLNVYTRTSMSGPLSRVWSV 2933


>SB_49517| Best HMM Match : Hydrolase (HMM E-Value=2.7e-27)
          Length = 228

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -1

Query: 429 KLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 250
           ++ E K+   +     V PI+ VL      RK G+P  +  G S+       K    L L
Sbjct: 77  EVYESKRKYFLSELASVSPIQCVLKYVHEARKRGIPVAVASGSSKKQVEKALKDTGILEL 136

Query: 249 TNVEFGD 229
            +V  G+
Sbjct: 137 FDVILGN 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,498
Number of Sequences: 59808
Number of extensions: 248219
Number of successful extensions: 834
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)