BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0389 (659 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 37 0.017 SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029 SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.067 SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061) 31 0.63 SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 31 0.83 SB_8499| Best HMM Match : DUF229 (HMM E-Value=0) 30 1.5 SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0) 30 1.5 SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) 30 1.9 SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045) 30 1.9 SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 29 2.5 SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21) 29 2.5 SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35) 29 4.4 SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 >SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) Length = 242 Score = 36.7 bits (81), Expect = 0.017 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = +3 Query: 417 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 557 E P EA+S D KVE P + E + EV+ATV E+ + +A E Sbjct: 22 ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAPMEEAAASVE 68 >SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1438 Score = 35.9 bits (79), Expect = 0.029 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Frame = +3 Query: 429 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP-SATDAEGSADSAAIIPNMVKKI 605 A + A++ +EE Q ED++ V+ A + K E P T+A D A K + Sbjct: 1172 ASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAPVEETEAPFEEDEAP-AEKTEKPV 1230 Query: 606 DLAPNVESDAAAVPE 650 + P+V+ A V E Sbjct: 1231 EAGPSVQEAEAPVKE 1245 Score = 31.9 bits (69), Expect = 0.48 Identities = 24/81 (29%), Positives = 44/81 (54%) Frame = +3 Query: 411 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 590 ++E+P +A ++ + E PAA+PE + E +A V + + EE P A + E + D Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVEDDAFEE-PEALN-EKAEDPKDEDET 644 Query: 591 MVKKIDLAPNVESDAAAVPEI 653 +K ++ P E++A A E+ Sbjct: 645 QEEKAEV-PIDEAEAEAQAEV 664 >SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2388 Score = 34.7 bits (76), Expect = 0.067 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = +3 Query: 435 AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLA 614 AKS D+K E A++ ++ T+ ++ K+ KP++ + A +A + N K +++ Sbjct: 1912 AKSKDVKNAEEASRNDEDDTKTGNVSEDLIKQAKPTSKTRKKRASLSAKVTNFEKTVNVD 1971 Query: 615 PNVESDAAAVPEI 653 +S +P + Sbjct: 1972 VESQSSERELPRV 1984 >SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061) Length = 410 Score = 31.5 bits (68), Expect = 0.63 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = +3 Query: 426 DAEAKSADIKVEEPAAQPEDSKT----EVQATVAEISKEEKPSATDAEGSADSAAIIP 587 DAE S+ I V P+AQ E +T V + +A ++ E D+ D AIIP Sbjct: 285 DAEPASSSISVSVPSAQAEQGRTTEGRPVSSDIATVAMEVPEVQGDSLADVDIDAIIP 342 >SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) Length = 5087 Score = 31.1 bits (67), Expect = 0.83 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = +3 Query: 456 VEEPAAQPEDSKTEVQATV--AEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAP 617 +E PA ED KT+ +AT AE+ +E KP+A D + SA S ++ I+++P Sbjct: 1129 LESPA---EDVKTDFEATSLEAEVFEEYKPTAKDVKESASSTV---HLAADIEISP 1178 >SB_8499| Best HMM Match : DUF229 (HMM E-Value=0) Length = 926 Score = 30.3 bits (65), Expect = 1.5 Identities = 16/60 (26%), Positives = 27/60 (45%) Frame = +3 Query: 408 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 587 K++ +P+A +A + E AQPE K E + + + + T A+ A A P Sbjct: 393 KATALPEAPKATAQPEAPEATAQPEAPKATALPEAPEATAQPEATETTAQPKAQKATAQP 452 >SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0) Length = 636 Score = 30.3 bits (65), Expect = 1.5 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Frame = +3 Query: 408 KSSEIPDAEAKSADIKVEEPAA-QPEDSKT-EV---QATVAEISKEEKPSATDAEGSADS 572 K + D + S+D +E A +P S T EV T A + EE+PS TD EGS + Sbjct: 359 KQTTAHDPTSSSSDQLIEHSVAGRPSPSVTPEVAREDCTQASLQLEERPSNTDGEGSGQT 418 >SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) Length = 1188 Score = 29.9 bits (64), Expect = 1.9 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = +3 Query: 423 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAA 578 PD +A + + + + P +Q EDS + T +S EE+P ++ S SAA Sbjct: 915 PDPQAPATNNQTDNPPSQYEDSSS--SETNGVLSDEEQPPLPLSDSSIQSAA 964 >SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045) Length = 191 Score = 29.9 bits (64), Expect = 1.9 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +3 Query: 414 SEIPDAE-AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 566 S++P + AK+A+ + E+ A PE+ E A E K ++ D EG+A Sbjct: 50 SKMPSKKGAKAAEAQPEKKAEAPEEKPAEDSKDQAVEESETKDASKDGEGNA 101 >SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) Length = 1866 Score = 29.5 bits (63), Expect = 2.5 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Frame = +3 Query: 408 KSSEIPDAEAKSADIKVEEPAA-QPEDSK-TEVQATVAEISKEEKPSA-TDAEGSADSAA 578 K + D E K + + E+ + E +K TEVQ V E +KEE PS DAE A Sbjct: 1025 KKRKDSDKERKVKEKEEEQKVKIEKEPNKVTEVQLMVEETNKEESPSTDRDAESELPKAG 1084 Query: 579 IIPNMVKKIDLAPN 620 + ++ P+ Sbjct: 1085 SVSALLSVFATEPS 1098 >SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21) Length = 595 Score = 29.5 bits (63), Expect = 2.5 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -2 Query: 538 GFSSFEISATVACTSVFESSG*AAGSSTLISADFASASGISDDF 407 G SS ++ +C+SVFE + A SS L AD + + IS ++ Sbjct: 498 GGSSSQMDVMGSCSSVFEQAMLAGESSNLSDADKSESKDISKNY 541 >SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35) Length = 1078 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +3 Query: 3 WQSQRSHIKLIFYLNNLCQCFKKRRRVTGSIFKMKVLLL 119 W+S R+ I + N +C+KKR +V GS + V +L Sbjct: 792 WKSYRNTILIQNQSNETVRCYKKRLKVKGSEDNVNVSVL 830 >SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 575 Score = 27.9 bits (59), Expect = 7.7 Identities = 24/76 (31%), Positives = 31/76 (40%) Frame = +3 Query: 408 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 587 + S + +AEA EE A+PE T E S E KP A+ E +A A P Sbjct: 492 RKSPVSEAEAPKPSAAKEE--AEPEQMDTSEPEPAKEPSSEIKPEASKPE-TAKPEATSP 548 Query: 588 NMVKKIDLAPNVESDA 635 + P ES A Sbjct: 549 TDGEPAKPEPAEESSA 564 >SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1918 Score = 27.9 bits (59), Expect = 7.7 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Frame = +3 Query: 441 SADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII--PNMVKKI 605 SA + A++ D ++++ + A+ K+E+ SAT + ++S+ ++ P+ ++KI Sbjct: 196 SATHRTLSAASRDLDKRSDISLSSAKPEKQEQESATVEQPESESSTMVLYPHQIQKI 252 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,398,400 Number of Sequences: 59808 Number of extensions: 252106 Number of successful extensions: 1156 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 840 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1137 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1693527500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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