Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0388
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.41 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 263 NKNILKNIMILLFISFEILINNFRGLLSIYKTPLFLSVFFSHVNYHFVNVCR*DSRGTNH 442
           N+N+L N + L  ++F+IL  N   L+   +   F +   +H N H  N  R  S+  N 
Sbjct: 383 NQNVLNNDLNLEHVNFQILGANVNDLIRNSRCANFDNQDNNHYN-HNHNQARHSSKSDNQ 441

Query: 443 ES 448
            +
Sbjct: 442 NN 443


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 564 SHDVVKRRPVNCNTTHYRANWVPGPPF 484
           S +  K++P +C+T  YR   V  P F
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTPLF 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,793
Number of Sequences: 438
Number of extensions: 3814
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)