Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0388
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    31   1.0  
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    29   4.0  
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    28   5.3  
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p...    28   5.3  

>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -3

Query: 177 VRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRSCQSYNEDGEQNEQFREHFEQFSK 4
           ++ +  G  + +TDV W R    +++V++    R   ++  D E NE   EH+ + ++
Sbjct: 407 MQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFSAWKND-EGNEAEDEHWHELAR 463


>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 108 VVAVTRVDLLRSC-QSYNEDGEQNEQFREHFEQFSK 4
           ++ V R +L++ C + +NE  E  E + + +E FSK
Sbjct: 385 ILKVIRKNLVKKCIEMFNEIAENKEDYTKFYEAFSK 420


>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 71  QDLNRSTLVTATTITDIRIQATSVIPDTVPWPMDRTVA 184
           + +N +TLVTA  I      A   +PDT  W M  T+A
Sbjct: 689 ESVNYATLVTARLIIVASHMAGLGLPDTEAWNMIETIA 726


>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 1187

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 71  QDLNRSTLVTATTITDIRIQATSVIPDTVPWPMDRTVA 184
           + +N +TLVTA  I      A   +PDT  W M  T+A
Sbjct: 689 ESVNYATLVTARLIIVASHMAGLGLPDTEAWNMIETIA 726


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,673,292
Number of Sequences: 28952
Number of extensions: 259413
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)