Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0387
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                99   4e-35
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               31   1.1  
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)                31   1.1  
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            25   1.9  
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)                     29   3.4  
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.4  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   28   5.9  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                28   7.9  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  28   7.9  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   7.9  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 98.7 bits (235), Expect(2) = 4e-35
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +2

Query: 95  TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 274
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644



 Score = 67.7 bits (158), Expect(2) = 4e-35
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = +2

Query: 374 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 553
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+ GEE V+ 
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702

Query: 554 GK 559
            K
Sbjct: 703 VK 704


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 108 TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 242
           T+K HT++P T  P    P N+ P + + +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 84  KFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPC 182
           K KT +  T+K +T++P T  P+   P   +PC
Sbjct: 100 KPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 96  QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 251
           +Q V S      P  P P PP+PC + PC +T     +VVH+  L    P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171


>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
          Length = 1049

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = -2

Query: 603 PINAELVYLSRAVF---ALPAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSR 433
           P    L Y + A+F    +PA    S QD+  +H NS      + N +P+  S I ++  
Sbjct: 70  PSFGPLNYATMAIFPPNTVPAPPQDSTQDYREIHTNSFYFQHQMSNTLPKEES-IQQADE 128

Query: 432 RSPLSAIRV 406
            +P   + V
Sbjct: 129 SAPHDILSV 137


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 24.6 bits (51), Expect(2) = 1.9
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 159 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMK 317
           +PC ++ C + +S+    V   ++K P   P    TL   ++G  +  +K +K
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVK 450



 Score = 23.8 bits (49), Expect(2) = 1.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 141 PGPQPPSPCNVRP 179
           PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374


>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
 Frame = +2

Query: 341 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 508
           +D+P+ K + + L  ++DD  L+    +  D   L E L  PD  +    R   D G E 
Sbjct: 37  LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94

Query: 509 LCTVLKSCGEECVIAGKANTALDK*TNSAFIGVNKLFNFL--QFNNSYINVKH 661
           LC  L+     C         +    N A   +N  + +L   FN ++++  H
Sbjct: 95  LCMTLRRFAYPCRYEDLV-PQISMVVNEAVSYINTNYRYLLSSFNQAWLSPAH 146


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 24/96 (25%), Positives = 40/96 (41%)
 Frame = +2

Query: 326 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 505
           P +  + V   +  +++  D   +      ADN + RE+    + +L ++  T    G  
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343

Query: 506 LLCTVLKSCGEECVIAGKANTALDK*TNSAFIGVNK 613
              T  KS GEE V A ++  +LD   N    G  K
Sbjct: 344 SAATYGKSDGEENV-AQESEESLDDDDNKENDGEEK 378


>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 1958

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 130 LEVCVFDVTHCCVLNLTTVRNDKIKKITIY 41
           + + +F VT+CC L LT +   + +++TIY
Sbjct: 14  VNLIIFTVTNCCFLVLTALIGFRDRQVTIY 43


>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 185 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNG 304
           + G +M +G+PCKI   +   K G HG   +H+ G D  NG
Sbjct: 17  RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG 55


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +2

Query: 299 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 427
           NG  Y   CP   N D    + EDY  +   D  YLT   D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441


>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
 Frame = +2

Query: 119  THFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKT-----GKHGHAKVHLV 283
            T  E+G   +    P QC+    + F+    RP + +  S ++      G     +  L 
Sbjct: 865  TRRESGQRVSHGLSPKQCAVSVVSSFMDSGARPRRFLPGSQARPRRFLPGSQPRPRRFLP 924

Query: 284  GIDIFNGKKYE--DICPSTHNMDVPHVKREDYQLTDISD-DGYLTLMADNGDLREDLKIP 454
             + +  G  Y   ++ P    +D+     + Y++ ++   D YL L  D GD    LK+ 
Sbjct: 925  VLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYPVLKLD 984

Query: 455  DGDLGTQLRTD 487
             GD    L+ D
Sbjct: 985  PGDFYPVLKRD 995


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 534 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 403
           P+  S V + +LP+   V  C+P SPS I RS    P     VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 111 SKTHTSRPETPGPQPPSPCNV 173
           ++T T++PET  P+PP+P  +
Sbjct: 165 TETTTTKPETKPPKPPAPSTI 185


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = -2

Query: 555 PAMTHSSPQDF-------STVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 403
           P  + SSP+D+       ST+ NN+  ++ SV+      P   +++  R+P S +  R
Sbjct: 670 PESSPSSPEDYPDPTNTQSTIENNNNEVASSVKGSAVVKPMVSVKAEERAPTSLVTSR 727


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 105 VTSKTHTSRPETPGPQPPSPCNVRP 179
           VT K  T +P TP P  P P   RP
Sbjct: 768 VTPKPVTPKPVTPKPVTPKPVTTRP 792


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,250,654
Number of Sequences: 59808
Number of extensions: 478245
Number of successful extensions: 1525
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)