Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0387
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   199   2e-51
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   189   1e-48
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   0.73 
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    29   2.2  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    29   2.2  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    29   2.2  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    29   2.2  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   2.2  
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   3.9  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    28   5.2  
L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical p...    27   9.1  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  199 bits (485), Expect = 2e-51
 Identities = 95/154 (61%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
 Frame = +2

Query: 113 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 292
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 293 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 469
           IF  KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG
Sbjct: 67  IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125

Query: 470 TQLRTDFDSGK-ELLCTVLKSCGEECVIAGKANT 568
            Q+R  ++  +  +L  V+ + GEE ++  K +T
Sbjct: 126 QQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  189 bits (461), Expect = 1e-48
 Identities = 89/154 (57%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
 Frame = +2

Query: 113 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 292
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 293 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 469
           IF  KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159

Query: 470 TQLRTDFDSGK-ELLCTVLKSCGEECVIAGKANT 568
             +R   +  +  +L  V+ +CGEE ++  K +T
Sbjct: 160 NTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +2

Query: 338 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 508
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 509 LCTVLKSCGEEC 544
              ++K CG++C
Sbjct: 630 HAALVKECGDKC 641


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 111 SKTHTSRPETPGPQPPSPCNVRPCVKTV 194
           S + T+   TPGP P +PC+  P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 111 SKTHTSRPETPGPQPPSPCNVRPCVKTV 194
           S + T+   TPGP P +PC+  P V T+
Sbjct: 29  SASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 111 SKTHTSRPETPGPQPPSPCNVRPCVKTV 194
           S + T+   TPGP P +PC+  P V T+
Sbjct: 183 SASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 111 SKTHTSRPETPGPQPPSPCNVRPCVKTV 194
           S + T+   TPGP P +PC+  P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 108 TSKTHTSRPETPGPQPPSPCNVRP 179
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +2

Query: 293 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 448
           IF   + ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 74  IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +3

Query: 420  TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPAK 560
            T +TC  T+  + +  ++SC         CC     C NP   +   PAK
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +3

Query: 420  TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPAK 560
            T +TC  T+  + +  ++SC         CC     C NP   +   PAK
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical protein
            C08B11.3 protein.
          Length = 1244

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 525  NPAVRSASSPAKQTQLSTNKPTQHL*GLTNF 617
            +P    AS+P K++   +NKPT H+  + NF
Sbjct: 1166 SPTSSVASAPMKESTSVSNKPTVHINRMLNF 1196


>L08403-7|AAA28019.2|  309|Caenorhabditis elegans Hypothetical
           protein F42H10.9 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 584 TNSAFIGVNKLFNFLQFNNSYINVKHNI 667
           TNS  +  N  F FL++NNS     H++
Sbjct: 68  TNSILVLYNDTFKFLEYNNSVRQTAHDV 95


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 398 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 514
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 195 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 103
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical
           protein C50F2.8 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 23/78 (29%), Positives = 36/78 (46%)
 Frame = -1

Query: 460 TIRDFEVLTQVTVVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILFTIEDINPN 281
           T  D   LTQV V  H GQ+ ++  I++   + L  G V     G D++    IE++   
Sbjct: 137 TTVDAGQLTQVEVEKHGGQL-VVTKINEKSNYDLKPGDVITQVDGKDVYFRADIENLK-G 194

Query: 280 QVNFSVAVLSGFGCGHFN 227
           +V  +V   +G  C   N
Sbjct: 195 KVELTVEP-AGIHCAPAN 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,577,025
Number of Sequences: 27780
Number of extensions: 347837
Number of successful extensions: 1157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)