Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0386
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    29   0.80 
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   7.4  

>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 610 STNPEQSHWLQLNYVRDFLISFFILTFLVTFT 515
           S +   S WLQL  +   ++SF ++ F++ FT
Sbjct: 187 SKSKRLSFWLQLGMIIAVVVSFIVMIFILQFT 218


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 54  MLK*NDLTVCTLEMFFHVIVFAS 122
           ML   D+T+C LEMFF ++  AS
Sbjct: 167 MLAIKDVTLCPLEMFFLLLNNAS 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,336
Number of Sequences: 5004
Number of extensions: 39323
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)