Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0386
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70782-2|CAA94839.1|  387|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z70782-2|CAA94839.1|  387|Caenorhabditis elegans Hypothetical
           protein R04B5.3 protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 397 SNTISLLINCIGLKFCYNKFTVLRFDKKKIFISIYTI 507
           SN +SL+ + IG  +C+N+F  L  D+K I  S +++
Sbjct: 179 SNEMSLVADWIG--WCFNEFEFLPTDQKSILFSNFSV 213


>AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical
           protein Y55D5A.3 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 5   SARGKITWVKLISVYMYVKMKRLDSMYVRDVL---SRYCVRIDILRAIHNSIVLYIVVS 172
           +AR    ++  I +  Y K KR  S ++RDVL   + Y   +D     H     YI+V+
Sbjct: 190 NARYSGAYIDNILMEFYTKFKRPVSFFIRDVLENQATYTEAVDAFSRTHLFSPSYIIVA 248


>Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical
           protein Y7A9C.9 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 93  MFFHVIVFASI-YYVPFIIPSFFIS 164
           +FFHV++F SI +Y+P +I +  IS
Sbjct: 201 LFFHVLLFLSIPFYIPIMISAQKIS 225


>U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical
           protein T25G12.2 protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 373 RNELHCRFSNTISLLINCIGLKFCYNKFTVLRFDKKKIFISI 498
           +N+  C FS  I++ +N     FC  KF  +    +K F+ I
Sbjct: 338 KNKKDCEFSGWITIALNGTSKTFCTFKFQEITSIVQKRFVQI 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,221,361
Number of Sequences: 27780
Number of extensions: 213980
Number of successful extensions: 453
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)