Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0385
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    25   9.5  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   9.5  

>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 336 SESSIHFIT*QALTDEQKGNLKKHRADCLAET-KADEQLVNKLK 464
           +E+++ F + +  TDE  GNL +H      ++  ADE  +N  K
Sbjct: 336 NENTMFFDSKEHSTDESDGNLGEHDVKRKVDSVPADETSINGFK 379


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 432 WSRQDSRLCVSSSSPSAHL 376
           + R D  +C+SSSS  AHL
Sbjct: 206 FQRNDKSMCISSSSFIAHL 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,066
Number of Sequences: 5004
Number of extensions: 39360
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)