Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0385
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688           29   3.1  
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504...    28   5.5  
05_03_0453 - 14223012-14223175,14223956-14223992,14224171-142243...    27   9.6  

>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
          Length = 308

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 5   NRVHHEDFYRVRRLRCPGSGEN*ILFLNYVPFILSLLLN 121
           N++ HE+  R R   CP +G    L    VP ++S L+N
Sbjct: 133 NKLKHEELCRFRPYSCPYAGSE-CLIAGDVPMLVSHLIN 170


>04_04_1592 -
           34649484-34649547,34650118-34650186,34650325-34650444,
           34650630-34650742,34650824-34650898,34651224-34651346,
           34651427-34651446,34652354-34652410,34652922-34653860,
           34653961-34654189,34654296-34654439,34654527-34654601,
           34655363-34655433,34656103-34656205,34656407-34656633,
           34656791-34656908,34657239-34657369,34657709-34657802
          Length = 923

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 495 IFPTSPKSRLSSVCSPVVHQLWSRQDSR 412
           +F +S +SRL+ +   +VHQ+W R D R
Sbjct: 764 LFLSSTRSRLTKL--QIVHQMWQRNDIR 789


>05_03_0453 -
          14223012-14223175,14223956-14223992,14224171-14224312,
          14224858-14225038,14225460-14225655
          Length = 239

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 98 KVHNLKKGFNSHLSQDNADDE--HDKS 24
          K+H  KKG +S  S D+ DD+  H KS
Sbjct: 17 KIHEFKKGSSSSSSSDSDDDKKHHHKS 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,290,934
Number of Sequences: 37544
Number of extensions: 214686
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)