Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0385
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14)        31   0.60 
SB_35522| Best HMM Match : AT_hook (HMM E-Value=7.3)                   28   4.2  
SB_51702| Best HMM Match : SURF6 (HMM E-Value=4)                       28   5.6  
SB_296| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07)                   28   5.6  

>SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14)
          Length = 784

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -3

Query: 526 LSND*GEVVMNFSHIP*KSPVFSLFTSCSSALVSARQSALCF-FKFPFCSSVRA 368
           L+ D  E V ++S+I   + VFS+ +  + +LV +   ++CF F +PF S + A
Sbjct: 192 LAKDLPECVASYSYIFFFTFVFSILSPVAFSLVGSSTGSICFAFFYPFISGIFA 245


>SB_35522| Best HMM Match : AT_hook (HMM E-Value=7.3)
          Length = 250

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 492 FP-TSPKSRLSSVCSPVVHQLWSRQDSRLCVSS 397
           FP TS K+RLS  CS V    ++ QD++L +++
Sbjct: 28  FPLTSNKNRLSCYCSRVSGLFYNNQDNKLTITA 60


>SB_51702| Best HMM Match : SURF6 (HMM E-Value=4)
          Length = 260

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 128 TQHSKVTIV*KVHNLKKGFNSHLSQDNAD 42
           T   KVT V + H  +KG   H+  DN D
Sbjct: 232 TGEDKVTFVKRKHKERKGLRKHVKADNDD 260


>SB_296| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07)
          Length = 338

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 485 HPLKVACLQFVHQLFISFGLGKTVGSVFLQVPLLLICEGL 366
           +PLK+       +L +   LG  + S+ L VP+ L+ E L
Sbjct: 132 YPLKLYSASLARKLLVGIWLGGLIFSLLLTVPVKLVREAL 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,774,031
Number of Sequences: 59808
Number of extensions: 269225
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)