Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0385
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              24   0.86 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   1.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.6  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   4.6  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 378 DEQKGNLKKHRADCLAETKADEQLVNKLKTGDF 476
           DE +    K+R  C+ ETK   + V   + G+F
Sbjct: 30  DEFREMTSKYRKKCIGETKTTIEDVEATEYGEF 62


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 378 DEQKGNLKKHRADCLAETKADEQLVNKLKTGDF 476
           D+ +   K  R  CL +    E+LV+ ++ G+F
Sbjct: 27  DQVEKLAKNMRKSCLQKIAITEELVDGMRRGEF 59


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 406 TEPTVLPRPKLMNNW 450
           T P +LPRPK  NN+
Sbjct: 625 TLPCLLPRPKSENNF 639


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 406 TEPTVLPRPKLMNNW 450
           T P +LPRPK  NN+
Sbjct: 593 TLPCLLPRPKSENNF 607


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 408 RADCLAETKADEQLVNKLKTGD 473
           + DC  E+K     + K+K GD
Sbjct: 26  KKDCRKESKVSWAALKKMKAGD 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,665
Number of Sequences: 438
Number of extensions: 2438
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)