Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0385
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48080.1 68415.m06018 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   4.6  
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    27   8.0  
At1g45230.1 68414.m05193 defective chloroplasts and leaves prote...    27   8.0  

>At2g48080.1 68415.m06018 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam domain PF03171 2OG-Fe(II)
           oxygenase superfamily
          Length = 438

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 119 SKVTIV*KVHNLKKGFNSHLSQDNADDEHDKSLHD 15
           S+VT+  + H L KGF+ HL  D+ DD     + D
Sbjct: 85  SQVTLQLQQH-LAKGFHHHLDDDHDDDSPSSDITD 118


>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 189 NPNLISNVLDKSLVILDCTIDPTFKS 112
           +PNL+S +LD+ L +++  +   FKS
Sbjct: 79  DPNLVSAILDEELRVVESALRQNFKS 104


>At1g45230.1 68414.m05193 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to
           defective chloroplasts and leaves (DCL) protein
           SP:Q42463 from [Lycopersicon esculentum]
          Length = 219

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 499 MNFSHIP*KSPVFSLFTSCSSALVSARQSALCFFKFP 389
           M+ + IP  SPV S +  C + + S   S LC + FP
Sbjct: 1   MSLASIPSSSPVASPYFRCRTYIFSFSSSPLCLY-FP 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,486,698
Number of Sequences: 28952
Number of extensions: 190057
Number of successful extensions: 436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)