Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0384
         (323 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q27395 Cluster: Protein lin-15B; n=2; Caenorhabditis el...    36   0.17 
UniRef50_Q5CSZ8 Cluster: Predicted secreted protein, signal pept...    31   3.7  
UniRef50_A7K8C1 Cluster: Putative uncharacterized protein z161R;...    31   4.9  
UniRef50_A0BV02 Cluster: Chromosome undetermined scaffold_13, wh...    31   4.9  
UniRef50_A3DPJ4 Cluster: Phosphoesterase, DHHA1; n=1; Staphyloth...    31   4.9  
UniRef50_UPI00015B46BE Cluster: PREDICTED: hypothetical protein;...    31   6.5  
UniRef50_A2U494 Cluster: Two-component system response regulator...    30   8.6  
UniRef50_A0RX57 Cluster: Transcriptional regulator; n=1; Cenarch...    30   8.6  

>UniRef50_Q27395 Cluster: Protein lin-15B; n=2; Caenorhabditis
           elegans|Rep: Protein lin-15B - Caenorhabditis elegans
          Length = 1440

 Score = 35.9 bits (79), Expect = 0.17
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +2

Query: 56  IFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYIVQMCLK*CKQVTLSNN 229
           IFLTR +  H +   F  K+++   I N    F++  +   ++Q C+K C+++++ NN
Sbjct: 296 IFLTRCLVWHDTFTEFCGKLDILHYIDNET--FNHLIYLQRLLQQCMKHCRELSIPNN 351


>UniRef50_Q5CSZ8 Cluster: Predicted secreted protein, signal peptide;
            n=2; Cryptosporidium|Rep: Predicted secreted protein,
            signal peptide - Cryptosporidium parvum Iowa II
          Length = 1176

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = +2

Query: 20   YLVIAILTNLRNIFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYIVQMCLK 199
            + +  +LTNL NI L+ PI+      SFE K+E ++ +SN      N+ FQ Y   +  K
Sbjct: 1003 FAITNVLTNL-NIKLSFPIAR-----SFERKLEASIYVSNPKSTLFNSLFQPYFSGIPYK 1056

Query: 200  *CKQVTLSN 226
              K    SN
Sbjct: 1057 PFKSRVESN 1065


>UniRef50_A7K8C1 Cluster: Putative uncharacterized protein z161R;
           n=1; Chlorella virus ATCV-1|Rep: Putative
           uncharacterized protein z161R - Chlorella virus ATCV-1
          Length = 77

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 26  VIAILTNLRNIFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYI 181
           +  +   LR   LTR   H SSL   +IKI + V +  + H   ++YF H++
Sbjct: 9   IYTVSVRLRANTLTRSTMHTSSL--ADIKIFIYVNVETYHHRRHSSYFGHHL 58


>UniRef50_A0BV02 Cluster: Chromosome undetermined scaffold_13, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_13,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 417

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 14  PTYLVIAILTNLRNIFLTRPISHH-SSLDSFEIKIEVAVQISNHIHHFSNNYFQHY 178
           P YL++ IL NL N FL+   ++  S LD+  I I   ++ S+   HF+  Y   Y
Sbjct: 296 PIYLIVVILRNLNNFFLSICYNYFPSKLDNI-ISIYKLMEESSKAMHFTLLYILIY 350


>UniRef50_A3DPJ4 Cluster: Phosphoesterase, DHHA1; n=1;
           Staphylothermus marinus F1|Rep: Phosphoesterase, DHHA1 -
           Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
           F1)
          Length = 332

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 44  NLRNIFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYIV 184
           N+RN+ L      HS    F+IKI + +++ +    FSNN  Q YI+
Sbjct: 273 NIRNLALAFGGGGHSRAAGFKIKIPLIIRLKS---FFSNNAIQEYIM 316


>UniRef50_UPI00015B46BE Cluster: PREDICTED: hypothetical protein;
           n=3; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 1333

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 86  SSLDSFEIKIEVAVQISNHIHHFSNNYFQHYIVQMCLK*CKQV 214
           +S+  FE  +EV    S +IH  SNN   HY + MC    K+V
Sbjct: 2   ASIQLFERLVEVVRDTSRNIHGMSNNDI-HYWLDMCNSTIKEV 43


>UniRef50_A2U494 Cluster: Two-component system response regulator;
           n=1; Polaribacter dokdonensis MED152|Rep: Two-component
           system response regulator - Polaribacter dokdonensis
           MED152
          Length = 360

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 22/76 (28%), Positives = 40/76 (52%)
 Frame = +2

Query: 2   KLYVPTYLVIAILTNLRNIFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYI 181
           KLY+ T+L IA++  L  IF+++ +   S+    ++++E A + +N I  F +    + I
Sbjct: 5   KLYLFTFLSIALIFLLGAIFISQFLIKASAKQLIKVQVESAKREANEIADFLSFQLDNKI 64

Query: 182 VQMCLK*CKQVTLSNN 229
            +       Q  LSNN
Sbjct: 65  SKQESLERIQENLSNN 80


>UniRef50_A0RX57 Cluster: Transcriptional regulator; n=1;
           Cenarchaeum symbiosum|Rep: Transcriptional regulator -
           Cenarchaeum symbiosum
          Length = 339

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +2

Query: 29  IAILTNLRNIFLTRPISHHSSLDSFEIKIEVAVQISNHIH-H--FSNNY 166
           + +L  L  IF TR + + SSL + EI+ +  V+++ HI+ H   S+NY
Sbjct: 51  LGVLRQLSAIFDTRRLGYKSSLVAMEIEPDRLVEVAEHINLHPGVSHNY 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 299,010,453
Number of Sequences: 1657284
Number of extensions: 5047770
Number of successful extensions: 11182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11176
length of database: 575,637,011
effective HSP length: 84
effective length of database: 436,425,155
effective search space used: 10037778565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)