Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0384
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   1.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   2.1  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    24   4.9  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    24   6.5  

>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 92  LDSFEIKIEVAVQISNHIHHFSNNYFQHYIVQMCLK 199
           + S+++K  +   I + IH    N F +++VQ C +
Sbjct: 385 ISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFE 420


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 198  NSANKLLYRIIKTLYRVPLFSKNLFLWTGL 287
            N   KL Y +I+   ++ +  KN+++WT +
Sbjct: 2333 NIVYKLSYDVIRHFLKLVVLWKNIYVWTNV 2362


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -1

Query: 170 ESSYLKNDECGLKFALPLRF*FQTNPMNY-DVKLVEL 63
           E S+L N+EC ++  LPL+   + N + Y +VKL+++
Sbjct: 143 ELSFLGNEECCMQTNLPLQ---RINEVYYFEVKLLDV 176


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 38  LTNLRNIFLTRPISHHSSLDSFEIKIEVAVQISNHIH 148
           LT+ +NI LT  I   +    + I IEV+  ++ +I+
Sbjct: 333 LTHCKNIILTPHIGGSTEEAQYNIGIEVSEALTRYIN 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,351
Number of Sequences: 5004
Number of extensions: 22892
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)