Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0384
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917...    26   5.9  
07_03_0465 + 18465966-18466206,18467424-18467443,18467444-184677...    26   7.8  

>03_02_0955 - 12690405-12690842,12690940-12691130,12691208-12691718,
            12692240-12693171,12693260-12693351,12693430-12693509,
            12693568-12693621,12693734-12693850,12693949-12694194,
            12694273-12694432,12694512-12694576,12694686-12694877,
            12694980-12695061,12695153-12695925
          Length = 1310

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +2

Query: 29   IAILTNLRNIFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYIVQMCLK 199
            + +  N+  +   R +S     +S E   E+ + IS  +HH  ++   H+   +C K
Sbjct: 907  VHVFLNILKMLYVRVLSQSLPRES-EAVTELILGISRKLHHEQSHLVGHWAASLCQK 962


>07_03_0465 +
           18465966-18466206,18467424-18467443,18467444-18467729,
           18468557-18468666,18468744-18468909,18469303-18469433
          Length = 317

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 206 CTILGTSALCNVESSYLKND--ECGLKFALP 120
           C++ G    C V+  Y+++D   CGL   +P
Sbjct: 136 CSLRGNEFFCEVDDDYIQDDFNLCGLSSQVP 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,511,513
Number of Sequences: 37544
Number of extensions: 122121
Number of successful extensions: 254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)