Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0384
(323 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91) 29 0.87
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 29 1.1
SB_41971| Best HMM Match : CAT_RBD (HMM E-Value=2) 27 3.5
SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024) 27 3.5
SB_29447| Best HMM Match : VWA (HMM E-Value=0.36) 27 3.5
SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051) 27 3.5
SB_49272| Best HMM Match : CAT_RBD (HMM E-Value=2) 27 3.5
SB_47214| Best HMM Match : CAT_RBD (HMM E-Value=1.5) 27 3.5
SB_45190| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_43513| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-20) 26 8.1
SB_9684| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
Length = 399
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 41 TNLRNIFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQH 175
T + ++TR ISHH+ L + + IS+H H + + H
Sbjct: 90 TRVFTSYITRYISHHALLPTPRVTSNTTRYISHHALHLESRFAPH 134
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 17 TYLVIAILTNLRNIFLTRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQH 175
T+ + + + + FL R ISHH+ L +F + + S+H H ++ H
Sbjct: 178 THQALHLTKRVASHFL-RYISHHALLPTFRVTSHFSRYTSHHALHHTSRVASH 229
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 65 TRPISHHSSLDSFEIKIEVAVQISNHIHHFSNNYFQHYIVQMC 193
T+ H D+F++ + + I+NHIH S+ + I +C
Sbjct: 875 TQNYGHKDESDTFDMLGNIFLGIANHIHFLSDTHTVEKIKNIC 917
>SB_41971| Best HMM Match : CAT_RBD (HMM E-Value=2)
Length = 295
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 149 DECGLKFALPLRF*FQTNPMNYDVKLVELKKYSLNS 42
D C L +L L+F F+ + +V+L ELK+ N+
Sbjct: 149 DHCSLSCSLNLKFTFKQKDNSENVQLSELKRLRWNN 184
>SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)
Length = 1163
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 149 DECGLKFALPLRF*FQTNPMNYDVKLVELKKYSLNS 42
D C L +L L+F F+ + +V+L ELK+ N+
Sbjct: 851 DHCSLSCSLNLKFTFKQKDNSENVQLSELKRLRWNN 886
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 149 DECGLKFALPLRF*FQTNPMNYDVKLVELKKYSLNS 42
D C L +L L+F F+ + +V+L ELK+ N+
Sbjct: 54 DHCSLSCSLNLKFTFKQKNNSENVQLSELKRLRWNN 89
>SB_29447| Best HMM Match : VWA (HMM E-Value=0.36)
Length = 329
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 149 DECGLKFALPLRF*FQTNPMNYDVKLVELKKYSLNS 42
D C L +L L+F F+ + +V+L ELK+ N+
Sbjct: 92 DHCSLSCSLNLKFTFKQKDNSENVQLSELKRLRWNN 127
>SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)
Length = 891
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 149 DECGLKFALPLRF*FQTNPMNYDVKLVELKKYSLNS 42
D C L +L L+F F+ + +V+L ELK+ N+
Sbjct: 679 DHCSLSCSLNLKFTFKQKDNSENVQLSELKRLRWNN 714
>SB_49272| Best HMM Match : CAT_RBD (HMM E-Value=2)
Length = 318
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 149 DECGLKFALPLRF*FQTNPMNYDVKLVELKKYSLNS 42
D C L +L L+F F+ + +V+L ELK+ N+
Sbjct: 92 DHCSLSCSLNLKFTFKQKDNSENVQLSELKRLRWNN 127
>SB_47214| Best HMM Match : CAT_RBD (HMM E-Value=1.5)
Length = 238
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 149 DECGLKFALPLRF*FQTNPMNYDVKLVELKKYSLNS 42
D C L +L L+F F+ + +V+L ELK+ N+
Sbjct: 92 DHCSLSCSLNLKFTFKQKDNSENVQLSELKRLRWNN 127
>SB_45190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 149 DECGLKFALPLRF*FQTNPMNYDVKLVELKKYSLNS 42
D C L +L L+F F+ + +V+L ELK+ N+
Sbjct: 420 DHCSLSCSLNLKFTFKQKDNSENVQLSELKRLRWNN 455
>SB_43513| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-20)
Length = 337
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 5 LYVPTYLVIAILTNLRNIFLTRPISHHSSLDSFEIKIEV 121
L + + L I +++ R + L RP+ HH+ + + ++ V
Sbjct: 114 LRLASVLTITLISAERTLMLARPLQHHTIVTPGKARVAV 152
>SB_9684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 149 DECGLKFALPLRF*FQTNPMNYDVKLVELKK 57
D C L +L L+F F+ + +V+L ELK+
Sbjct: 158 DHCSLSCSLNLKFTFKQKDNSENVQLSELKR 188
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,079,352
Number of Sequences: 59808
Number of extensions: 153697
Number of successful extensions: 485
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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